Results 41 - 46 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18564 | 3' | -52.6 | NC_004682.1 | + | 44405 | 0.73 | 0.444052 |
|
Target: 5'- cUGgCACCGUCCAUGAUcGAgGACCAc -3' miRNA: 3'- aGCaGUGGCAGGUGCUA-CUgUUGGUc -5' |
|||||||
| 18564 | 3' | -52.6 | NC_004682.1 | + | 45215 | 0.71 | 0.548626 |
|
Target: 5'- gUCGUCACCGaCCGCGAgugcGCGguuCCAGc -3' miRNA: 3'- -AGCAGUGGCaGGUGCUac--UGUu--GGUC- -5' |
|||||||
| 18564 | 3' | -52.6 | NC_004682.1 | + | 46186 | 0.66 | 0.826625 |
|
Target: 5'- gUCGUCAccCCGUCCGgGGUucucGAUGGCCu- -3' miRNA: 3'- -AGCAGU--GGCAGGUgCUA----CUGUUGGuc -5' |
|||||||
| 18564 | 3' | -52.6 | NC_004682.1 | + | 49961 | 0.67 | 0.778069 |
|
Target: 5'- cUGUgGCCGUCC-CGAUGAgCAugCu- -3' miRNA: 3'- aGCAgUGGCAGGuGCUACU-GUugGuc -5' |
|||||||
| 18564 | 3' | -52.6 | NC_004682.1 | + | 49997 | 0.69 | 0.659656 |
|
Target: 5'- cUGUCACC-UCCugGGUGGuCAGCgGGc -3' miRNA: 3'- aGCAGUGGcAGGugCUACU-GUUGgUC- -5' |
|||||||
| 18564 | 3' | -52.6 | NC_004682.1 | + | 50169 | 0.66 | 0.865053 |
|
Target: 5'- gUCGUCACCacgacggauGUggucgaccucggucgCCugGGUGagGCAACCGGa -3' miRNA: 3'- -AGCAGUGG---------CA---------------GGugCUAC--UGUUGGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home