Results 41 - 46 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18564 | 3' | -52.6 | NC_004682.1 | + | 6960 | 0.66 | 0.826625 |
|
Target: 5'- ---aCACCGUCCugGAgGAguACCGc -3' miRNA: 3'- agcaGUGGCAGGugCUaCUguUGGUc -5' |
|||||||
| 18564 | 3' | -52.6 | NC_004682.1 | + | 23380 | 0.67 | 0.817293 |
|
Target: 5'- cCGUCGCgagGUCCGCGAgggccgugaacGACAGCgAGa -3' miRNA: 3'- aGCAGUGg--CAGGUGCUa----------CUGUUGgUC- -5' |
|||||||
| 18564 | 3' | -52.6 | NC_004682.1 | + | 39030 | 0.67 | 0.817293 |
|
Target: 5'- cUCGgccUCGCCgGUCCACGAcgccgaGACGgcACCGGu -3' miRNA: 3'- -AGC---AGUGG-CAGGUGCUa-----CUGU--UGGUC- -5' |
|||||||
| 18564 | 3' | -52.6 | NC_004682.1 | + | 3036 | 0.67 | 0.797056 |
|
Target: 5'- cCGUCACCGUUCgaucaggACGA-GGCGGCUg- -3' miRNA: 3'- aGCAGUGGCAGG-------UGCUaCUGUUGGuc -5' |
|||||||
| 18564 | 3' | -52.6 | NC_004682.1 | + | 18102 | 0.67 | 0.778069 |
|
Target: 5'- cUCGUCACCaUCUACGccGA-GGCCGGu -3' miRNA: 3'- -AGCAGUGGcAGGUGCuaCUgUUGGUC- -5' |
|||||||
| 18564 | 3' | -52.6 | NC_004682.1 | + | 50169 | 0.66 | 0.865053 |
|
Target: 5'- gUCGUCACCacgacggauGUggucgaccucggucgCCugGGUGagGCAACCGGa -3' miRNA: 3'- -AGCAGUGG---------CA---------------GGugCUAC--UGUUGGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home