miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18564 3' -52.6 NC_004682.1 + 23127 0.66 0.861749
Target:  5'- --aUCACCGUCa--GGUGaguuGCGGCCAGg -3'
miRNA:   3'- agcAGUGGCAGgugCUAC----UGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 44405 0.73 0.444052
Target:  5'- cUGgCACCGUCCAUGAUcGAgGACCAc -3'
miRNA:   3'- aGCaGUGGCAGGUGCUA-CUgUUGGUc -5'
18564 3' -52.6 NC_004682.1 + 10025 0.75 0.343167
Target:  5'- aUCGUgGUCGUCCACGGUGGCGcUCGGg -3'
miRNA:   3'- -AGCAgUGGCAGGUGCUACUGUuGGUC- -5'
18564 3' -52.6 NC_004682.1 + 22738 0.69 0.681873
Target:  5'- gCGcUCGCCG-CCGCGA--GCAGCCAc -3'
miRNA:   3'- aGC-AGUGGCaGGUGCUacUGUUGGUc -5'
18564 3' -52.6 NC_004682.1 + 37406 0.79 0.210231
Target:  5'- gUGUUGCCGUCCucguCGGUGACGACCu- -3'
miRNA:   3'- aGCAGUGGCAGGu---GCUACUGUUGGuc -5'
18564 3' -52.6 NC_004682.1 + 44065 0.72 0.504562
Target:  5'- cUUGUCGCCGUCCGUGAUGgaggcguACAugucACCAGc -3'
miRNA:   3'- -AGCAGUGGCAGGUGCUAC-------UGU----UGGUC- -5'
18564 3' -52.6 NC_004682.1 + 50169 0.66 0.865053
Target:  5'- gUCGUCACCacgacggauGUggucgaccucggucgCCugGGUGagGCAACCGGa -3'
miRNA:   3'- -AGCAGUGG---------CA---------------GGugCUAC--UGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 35890 1.1 0.00157
Target:  5'- cUCGUCACCGUCCACGAUGACAACCAGg -3'
miRNA:   3'- -AGCAGUGGCAGGUGCUACUGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 43545 0.66 0.825701
Target:  5'- cCGUCGCUGUCCcucagcACGGUGuCGAuguagccCCGGa -3'
miRNA:   3'- aGCAGUGGCAGG------UGCUACuGUU-------GGUC- -5'
18564 3' -52.6 NC_004682.1 + 8310 0.71 0.592709
Target:  5'- aCGcCACCGUCCGCucGAUGuucGCCAGc -3'
miRNA:   3'- aGCaGUGGCAGGUG--CUACuguUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 37248 0.66 0.853317
Target:  5'- cCGgauGCCG-CCACGGUGGCcguggguggucAACCAGc -3'
miRNA:   3'- aGCag-UGGCaGGUGCUACUG-----------UUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 9296 0.7 0.626159
Target:  5'- -gGUCAuCUGgaaCCGCGAgGACGGCCAGu -3'
miRNA:   3'- agCAGU-GGCa--GGUGCUaCUGUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 20150 0.7 0.626159
Target:  5'- cUCGUCGCUGaCCgacaGCGAUGGCGAUCc- -3'
miRNA:   3'- -AGCAGUGGCaGG----UGCUACUGUUGGuc -5'
18564 3' -52.6 NC_004682.1 + 13433 0.66 0.853317
Target:  5'- gUCGUCACCGaCgAgGAcGGCAAcacCCAGa -3'
miRNA:   3'- -AGCAGUGGCaGgUgCUaCUGUU---GGUC- -5'
18564 3' -52.6 NC_004682.1 + 16271 0.69 0.659656
Target:  5'- gUGUCACCGUCgAUG-UGAacacCGACCGGc -3'
miRNA:   3'- aGCAGUGGCAGgUGCuACU----GUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 25998 0.68 0.725628
Target:  5'- cUCGUCcucaGCCGU-CGCGAUGA-GGCCGGc -3'
miRNA:   3'- -AGCAG----UGGCAgGUGCUACUgUUGGUC- -5'
18564 3' -52.6 NC_004682.1 + 42760 0.66 0.835746
Target:  5'- -gGUCAggaCGUgCCACGcgGGCAgACCGGg -3'
miRNA:   3'- agCAGUg--GCA-GGUGCuaCUGU-UGGUC- -5'
18564 3' -52.6 NC_004682.1 + 26244 0.68 0.767845
Target:  5'- cUCGgUGCCGUCCGCGA--GCuuCCGGu -3'
miRNA:   3'- -AGCaGUGGCAGGUGCUacUGuuGGUC- -5'
18564 3' -52.6 NC_004682.1 + 49961 0.67 0.778069
Target:  5'- cUGUgGCCGUCC-CGAUGAgCAugCu- -3'
miRNA:   3'- aGCAgUGGCAGGuGCUACU-GUugGuc -5'
18564 3' -52.6 NC_004682.1 + 21901 0.67 0.788137
Target:  5'- gCGUucaCGCUGUCaGCGuuccUGGCGACCAGg -3'
miRNA:   3'- aGCA---GUGGCAGgUGCu---ACUGUUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.