miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18564 5' -61.8 NC_004682.1 + 23106 0.66 0.384943
Target:  5'- aUCGgugcGGUCGCCGCguggCGCAGUCaccAGAa -3'
miRNA:   3'- cAGC----CCAGCGGCGa---GCGUCGGc--UCUg -5'
18564 5' -61.8 NC_004682.1 + 26622 0.66 0.384943
Target:  5'- aUCGGGUUGgCGa-CGguGCCcGAGAUg -3'
miRNA:   3'- cAGCCCAGCgGCgaGCguCGG-CUCUG- -5'
18564 5' -61.8 NC_004682.1 + 34114 0.66 0.375524
Target:  5'- cGUCG--UCGCCGaaCGCcgagaacAGCCGGGACa -3'
miRNA:   3'- -CAGCccAGCGGCgaGCG-------UCGGCUCUG- -5'
18564 5' -61.8 NC_004682.1 + 44526 0.66 0.367934
Target:  5'- -gCGGGUCgGCCuGUcCGguGCCGuGGACc -3'
miRNA:   3'- caGCCCAG-CGG-CGaGCguCGGC-UCUG- -5'
18564 5' -61.8 NC_004682.1 + 18439 0.66 0.367934
Target:  5'- cGUCGGaGaacUCGCUGCUCGUcuacGGCgacagCGGGGCg -3'
miRNA:   3'- -CAGCC-C---AGCGGCGAGCG----UCG-----GCUCUG- -5'
18564 5' -61.8 NC_004682.1 + 39310 0.66 0.343403
Target:  5'- -gCGGGUUGCCGUUCaGCGGgagguggcugcCCGAGcCc -3'
miRNA:   3'- caGCCCAGCGGCGAG-CGUC-----------GGCUCuG- -5'
18564 5' -61.8 NC_004682.1 + 43980 0.66 0.343403
Target:  5'- --aGGGgCaCCGCUCGUacugcuugAGCUGAGACa -3'
miRNA:   3'- cagCCCaGcGGCGAGCG--------UCGGCUCUG- -5'
18564 5' -61.8 NC_004682.1 + 35948 0.66 0.335492
Target:  5'- -gCGGccUCGCCGC-CGCAGUacaUGAGGCg -3'
miRNA:   3'- caGCCc-AGCGGCGaGCGUCG---GCUCUG- -5'
18564 5' -61.8 NC_004682.1 + 18126 0.67 0.327715
Target:  5'- gGUCuGGGUCGgaagaaggcCCGCgaaGCGGCCaGGGCg -3'
miRNA:   3'- -CAG-CCCAGC---------GGCGag-CGUCGGcUCUG- -5'
18564 5' -61.8 NC_004682.1 + 32886 0.67 0.320072
Target:  5'- cGUCGGGUCGaCGUaaCGCuGC-GAGACg -3'
miRNA:   3'- -CAGCCCAGCgGCGa-GCGuCGgCUCUG- -5'
18564 5' -61.8 NC_004682.1 + 50354 0.67 0.312564
Target:  5'- cGUCGGugagCGCCGCcggaaGCGGCCcugGAGGCc -3'
miRNA:   3'- -CAGCCca--GCGGCGag---CGUCGG---CUCUG- -5'
18564 5' -61.8 NC_004682.1 + 41517 0.67 0.312564
Target:  5'- -aCGGGUCGUC-CUCGUcacuGCCGgugcGGACg -3'
miRNA:   3'- caGCCCAGCGGcGAGCGu---CGGC----UCUG- -5'
18564 5' -61.8 NC_004682.1 + 11033 0.67 0.30519
Target:  5'- aUCGGG-CGgCGCgcuauaCGCGGUCGAGGg -3'
miRNA:   3'- cAGCCCaGCgGCGa-----GCGUCGGCUCUg -5'
18564 5' -61.8 NC_004682.1 + 26442 0.67 0.29795
Target:  5'- -cCGaGGUUGaaGUUCGCGuucGCCGGGACg -3'
miRNA:   3'- caGC-CCAGCggCGAGCGU---CGGCUCUG- -5'
18564 5' -61.8 NC_004682.1 + 10997 0.67 0.290845
Target:  5'- cGUCccGuUCGCgGCUggcaagagCGCAGCCGAGGCa -3'
miRNA:   3'- -CAGccC-AGCGgCGA--------GCGUCGGCUCUG- -5'
18564 5' -61.8 NC_004682.1 + 20051 0.67 0.289439
Target:  5'- aUCGGGUggcccaaCGCUGCUCaGCccgcaucAGCCGuGGCg -3'
miRNA:   3'- cAGCCCA-------GCGGCGAG-CG-------UCGGCuCUG- -5'
18564 5' -61.8 NC_004682.1 + 4615 0.68 0.263749
Target:  5'- cGUCccGGagGCCacGCUCGCuGCCGAGAUc -3'
miRNA:   3'- -CAGc-CCagCGG--CGAGCGuCGGCUCUG- -5'
18564 5' -61.8 NC_004682.1 + 19825 0.68 0.257303
Target:  5'- -cCaGGUCGCCGaggCGCugaugcGCCGGGGCg -3'
miRNA:   3'- caGcCCAGCGGCga-GCGu-----CGGCUCUG- -5'
18564 5' -61.8 NC_004682.1 + 37122 0.69 0.215742
Target:  5'- gGUCacGUCGCCGC-CGUAGCCGAacgugugcGACg -3'
miRNA:   3'- -CAGccCAGCGGCGaGCGUCGGCU--------CUG- -5'
18564 5' -61.8 NC_004682.1 + 30638 0.69 0.215742
Target:  5'- cGUCcGGUCGCC-CgacagCGCGGCCaGGACg -3'
miRNA:   3'- -CAGcCCAGCGGcGa----GCGUCGGcUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.