Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18565 | 3' | -53.2 | NC_004682.1 | + | 43208 | 0.66 | 0.754773 |
|
Target: 5'- uUCGUUCUCUGUCAAGuaucaGCccauagcaaauggacAGuGGUAGc -3' miRNA: 3'- cAGCAAGAGACAGUUC-----CG---------------UCuCCGUC- -5' |
|||||||
| 18565 | 3' | -53.2 | NC_004682.1 | + | 49223 | 0.67 | 0.728887 |
|
Target: 5'- -cCGUUCUCUGUCAAGuCuuAGGCc- -3' miRNA: 3'- caGCAAGAGACAGUUCcGucUCCGuc -5' |
|||||||
| 18565 | 3' | -53.2 | NC_004682.1 | + | 43836 | 0.67 | 0.728887 |
|
Target: 5'- --aGUUCUCUGUCAAGuCAGcuacGCAGg -3' miRNA: 3'- cagCAAGAGACAGUUCcGUCuc--CGUC- -5' |
|||||||
| 18565 | 3' | -53.2 | NC_004682.1 | + | 50189 | 0.68 | 0.673254 |
|
Target: 5'- gGUCGacCUCgGUCGccuGGguGAGGCAa -3' miRNA: 3'- -CAGCaaGAGaCAGUu--CCguCUCCGUc -5' |
|||||||
| 18565 | 3' | -53.2 | NC_004682.1 | + | 30026 | 0.69 | 0.605242 |
|
Target: 5'- -cUGUUCUCUGUCAAGuGCGG-GuCAGa -3' miRNA: 3'- caGCAAGAGACAGUUC-CGUCuCcGUC- -5' |
|||||||
| 18565 | 3' | -53.2 | NC_004682.1 | + | 41177 | 0.69 | 0.605242 |
|
Target: 5'- uUCGUUCUCUGUCAA-GUAGuGGaCGu -3' miRNA: 3'- cAGCAAGAGACAGUUcCGUCuCC-GUc -5' |
|||||||
| 18565 | 3' | -53.2 | NC_004682.1 | + | 49674 | 0.7 | 0.516219 |
|
Target: 5'- uUCGgUCUCUGUCAAGuCuuGAGGCAa -3' miRNA: 3'- cAGCaAGAGACAGUUCcGu-CUCCGUc -5' |
|||||||
| 18565 | 3' | -53.2 | NC_004682.1 | + | 39124 | 0.74 | 0.324082 |
|
Target: 5'- -cCGUUCUCUGUCAAGuGUc-AGGCAGc -3' miRNA: 3'- caGCAAGAGACAGUUC-CGucUCCGUC- -5' |
|||||||
| 18565 | 3' | -53.2 | NC_004682.1 | + | 38230 | 0.74 | 0.308047 |
|
Target: 5'- -cCGUUCUCUGUCAAGGgAGGGuCAc -3' miRNA: 3'- caGCAAGAGACAGUUCCgUCUCcGUc -5' |
|||||||
| 18565 | 3' | -53.2 | NC_004682.1 | + | 35687 | 1.1 | 0.001112 |
|
Target: 5'- aGUCGUUCUCUGUCAAGGCAGAGGCAGg -3' miRNA: 3'- -CAGCAAGAGACAGUUCCGUCUCCGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home