Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18566 | 3' | -53.4 | NC_004682.1 | + | 1037 | 0.67 | 0.767845 |
Target: 5'- --aCACGUCGGC-GUGAgGgaaCGCGACa -3' miRNA: 3'- caaGUGUAGCUGcCACUgUg--GCGCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 1903 | 0.73 | 0.405427 |
Target: 5'- --cCACAUCGACGGccagGugGCCGacuaCGACg -3' miRNA: 3'- caaGUGUAGCUGCCa---CugUGGC----GCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 3221 | 0.71 | 0.495089 |
Target: 5'- --cUACGUCGGCGGcgcGGCACaggGCGACa -3' miRNA: 3'- caaGUGUAGCUGCCa--CUGUGg--CGCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 4643 | 0.66 | 0.778069 |
Target: 5'- -aUCGaggcCAUCGagaaccccggacGgGGUGACgACCGCGACg -3' miRNA: 3'- caAGU----GUAGC------------UgCCACUG-UGGCGCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 7772 | 0.67 | 0.746976 |
Target: 5'- --gCACAUCccCGGcaacGACACCGUGGCc -3' miRNA: 3'- caaGUGUAGcuGCCa---CUGUGGCGCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 8383 | 0.68 | 0.692914 |
Target: 5'- --gUACGUCGACcaGUGGgGCCGgGACu -3' miRNA: 3'- caaGUGUAGCUGc-CACUgUGGCgCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 14731 | 0.66 | 0.814454 |
Target: 5'- aGUUCgGCuUCGACGGUgguGACACCgagguccgggguucGUGGCa -3' miRNA: 3'- -CAAG-UGuAGCUGCCA---CUGUGG--------------CGCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 14992 | 0.67 | 0.725628 |
Target: 5'- --cCACAaggCGuCGGUG-CGCCGgGACg -3' miRNA: 3'- caaGUGUa--GCuGCCACuGUGGCgCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 16261 | 0.69 | 0.637333 |
Target: 5'- --gCugGUCG-CGGUGuCACCGuCGAUg -3' miRNA: 3'- caaGugUAGCuGCCACuGUGGC-GCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 20677 | 0.69 | 0.61499 |
Target: 5'- --cCACAUggccaaGugGGUGAUgaacuucaaggGCCGCGACa -3' miRNA: 3'- caaGUGUAg-----CugCCACUG-----------UGGCGCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 23156 | 0.71 | 0.484659 |
Target: 5'- --cCACAgCGGCGG-GAuCGCCGCGAUc -3' miRNA: 3'- caaGUGUaGCUGCCaCU-GUGGCGCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 23618 | 0.66 | 0.787138 |
Target: 5'- -gUCGCuUCGGCGGUggccaagaucaucGACACCcUGACc -3' miRNA: 3'- caAGUGuAGCUGCCA-------------CUGUGGcGCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 24481 | 0.66 | 0.788137 |
Target: 5'- -aUCAuCAUCGACuacaccGACACCGCuGGCa -3' miRNA: 3'- caAGU-GUAGCUGcca---CUGUGGCG-CUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 27104 | 0.66 | 0.807761 |
Target: 5'- -gUCugGcCGcucaaACGGUGAgACCGUGGCc -3' miRNA: 3'- caAGugUaGC-----UGCCACUgUGGCGCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 27547 | 0.71 | 0.526959 |
Target: 5'- -gUCGCuaCGGCGGcgacacUGGCGCUGCGGCa -3' miRNA: 3'- caAGUGuaGCUGCC------ACUGUGGCGCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 27656 | 0.71 | 0.484659 |
Target: 5'- --cCACAUCGggcACGGUGAUuucgauggugAUCGCGGCg -3' miRNA: 3'- caaGUGUAGC---UGCCACUG----------UGGCGCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 28708 | 0.68 | 0.703895 |
Target: 5'- -cUCGCggCGGCGGcgggacgaagaUGACGCCGUG-Cg -3' miRNA: 3'- caAGUGuaGCUGCC-----------ACUGUGGCGCuG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 29678 | 0.67 | 0.757477 |
Target: 5'- --aCACA-CGAUGGUGAgCugCGCGuCc -3' miRNA: 3'- caaGUGUaGCUGCCACU-GugGCGCuG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 32110 | 0.72 | 0.434201 |
Target: 5'- gGUUCACGUCGAa--UGACuCCGCGAUu -3' miRNA: 3'- -CAAGUGUAGCUgccACUGuGGCGCUG- -5' |
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18566 | 3' | -53.4 | NC_004682.1 | + | 34096 | 0.72 | 0.444052 |
Target: 5'- -gUCgACGUUGGCGGUgaagGACACCGCGu- -3' miRNA: 3'- caAG-UGUAGCUGCCA----CUGUGGCGCug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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