Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18566 | 5' | -56 | NC_004682.1 | + | 39328 | 0.67 | 0.565858 |
Target: 5'- cGCuucCGCuUGCCGUUggCGCGGCGGc- -3' miRNA: 3'- -CGua-GCG-GCGGUAGuaGCGCCGCUug -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 27517 | 0.67 | 0.565858 |
Target: 5'- ---gUGCCGCuUGUCAUCGaCGGCGGc- -3' miRNA: 3'- cguaGCGGCG-GUAGUAGC-GCCGCUug -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 23124 | 0.67 | 0.565858 |
Target: 5'- aGCAUCaCCGUCAggugaGUUGCGGCcagGAGCc -3' miRNA: 3'- -CGUAGcGGCGGUag---UAGCGCCG---CUUG- -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 5257 | 0.68 | 0.555039 |
Target: 5'- -gAUCGCCGCCAUgcUCGCcGCGcuggGGCu -3' miRNA: 3'- cgUAGCGGCGGUAguAGCGcCGC----UUG- -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 16148 | 0.68 | 0.533592 |
Target: 5'- aGC-UCGaaGCCAUCGagaagucgaugCGCGGCGAGg -3' miRNA: 3'- -CGuAGCggCGGUAGUa----------GCGCCGCUUg -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 10560 | 0.68 | 0.522978 |
Target: 5'- gGCAggaCGCCGaCAgaUCAUCGgGGCGGu- -3' miRNA: 3'- -CGUa--GCGGCgGU--AGUAGCgCCGCUug -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 7450 | 0.68 | 0.522978 |
Target: 5'- cCAUCGCCGCCGUCAgccaGGaccagacgaaGAACa -3' miRNA: 3'- cGUAGCGGCGGUAGUagcgCCg---------CUUG- -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 48173 | 0.68 | 0.512447 |
Target: 5'- -gGUCGCUGCCGccaCAcCG-GGCGAGCa -3' miRNA: 3'- cgUAGCGGCGGUa--GUaGCgCCGCUUG- -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 37126 | 0.68 | 0.512447 |
Target: 5'- aCGUCGCCGCCGUagccgaaCGUGuGCGAc- -3' miRNA: 3'- cGUAGCGGCGGUAgua----GCGC-CGCUug -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 32380 | 0.68 | 0.512447 |
Target: 5'- gGCAUCGCCGaacaCuUCcuUCGCGGCcuGCa -3' miRNA: 3'- -CGUAGCGGCg---GuAGu-AGCGCCGcuUG- -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 33582 | 0.68 | 0.502005 |
Target: 5'- -uGUCGCCGaCCAUCugcUCGUaGGCGuccuGCa -3' miRNA: 3'- cgUAGCGGC-GGUAGu--AGCG-CCGCu---UG- -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 35183 | 0.69 | 0.491656 |
Target: 5'- gGCAgUCGCCGUauUCGUCaaucagGCGgGCGAGCg -3' miRNA: 3'- -CGU-AGCGGCGguAGUAG------CGC-CGCUUG- -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 28689 | 0.69 | 0.481407 |
Target: 5'- gGCGUgccgaUGCCGCCcac-UCGCGGCGGcgGCg -3' miRNA: 3'- -CGUA-----GCGGCGGuaguAGCGCCGCU--UG- -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 36324 | 0.69 | 0.461229 |
Target: 5'- gGCGagUGCCaggGCCGUCGUCGCgGGUGAc- -3' miRNA: 3'- -CGUa-GCGG---CGGUAGUAGCG-CCGCUug -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 45305 | 0.69 | 0.461229 |
Target: 5'- cCGUCGCgaGaCCGUCucgauGUCGCGGCGGucGCa -3' miRNA: 3'- cGUAGCGg-C-GGUAG-----UAGCGCCGCU--UG- -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 10260 | 0.69 | 0.451309 |
Target: 5'- cCAUCGCCGCCggCAUCcCGGuCGucAACc -3' miRNA: 3'- cGUAGCGGCGGuaGUAGcGCC-GC--UUG- -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 13173 | 0.7 | 0.40447 |
Target: 5'- cGCAUCGUCGUCAUCAgcgacacgcagauccCGUuccacgaccGGCGGGCg -3' miRNA: 3'- -CGUAGCGGCGGUAGUa--------------GCG---------CCGCUUG- -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 24382 | 0.7 | 0.394384 |
Target: 5'- --uUCGCCuCCAaCGUCcCGGCGAACg -3' miRNA: 3'- cguAGCGGcGGUaGUAGcGCCGCUUG- -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 45572 | 0.71 | 0.367718 |
Target: 5'- aGCAgcaGCC-CCAg---CGCGGCGAGCa -3' miRNA: 3'- -CGUag-CGGcGGUaguaGCGCCGCUUG- -5' |
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18566 | 5' | -56 | NC_004682.1 | + | 32894 | 0.72 | 0.302857 |
Target: 5'- aGgAUCGCCGgCAUCAuUCGUG-CGAACg -3' miRNA: 3'- -CgUAGCGGCgGUAGU-AGCGCcGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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