miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18568 3' -57 NC_004682.1 + 23740 0.66 0.581827
Target:  5'- gGUGCUggagauCCUGGCUggGuuGGCCgUCa -3'
miRNA:   3'- gCACGAgau---GGACCGA--UggCCGGaAG- -5'
18568 3' -57 NC_004682.1 + 46520 0.66 0.570908
Target:  5'- gGUaGCUCUugAgCUGGCcGCUGGUCUUUu -3'
miRNA:   3'- gCA-CGAGA--UgGACCGaUGGCCGGAAG- -5'
18568 3' -57 NC_004682.1 + 50689 0.66 0.570908
Target:  5'- cCG-GCUCUGugUGGCccugUGCCGGCCc-- -3'
miRNA:   3'- -GCaCGAGAUggACCG----AUGGCCGGaag -5'
18568 3' -57 NC_004682.1 + 39570 0.66 0.569819
Target:  5'- --cGCUCgauCCUGGUUGCgaugcgaCGGCCUa- -3'
miRNA:   3'- gcaCGAGau-GGACCGAUG-------GCCGGAag -5'
18568 3' -57 NC_004682.1 + 40736 0.66 0.56004
Target:  5'- uCGUGCUUcucgAUCUGG--ACCGGCCa-- -3'
miRNA:   3'- -GCACGAGa---UGGACCgaUGGCCGGaag -5'
18568 3' -57 NC_004682.1 + 46908 0.66 0.54923
Target:  5'- gGUGCUCUGCCgauUGaGCUACagaucaaugaGGCCc-- -3'
miRNA:   3'- gCACGAGAUGG---AC-CGAUGg---------CCGGaag -5'
18568 3' -57 NC_004682.1 + 32114 0.67 0.538485
Target:  5'- uCGaUGCgCUGCUggagGGCUGCCuucgcGGCCUUg -3'
miRNA:   3'- -GC-ACGaGAUGGa---CCGAUGG-----CCGGAAg -5'
18568 3' -57 NC_004682.1 + 10799 0.67 0.506716
Target:  5'- gGUGCgaCUGCaaagUGG-UGCCGGUCUUCa -3'
miRNA:   3'- gCACGa-GAUGg---ACCgAUGGCCGGAAG- -5'
18568 3' -57 NC_004682.1 + 46869 0.68 0.4458
Target:  5'- -uUGCUUgucgGCCUGGaUGCUGGCCaugUCg -3'
miRNA:   3'- gcACGAGa---UGGACCgAUGGCCGGa--AG- -5'
18568 3' -57 NC_004682.1 + 44309 0.7 0.362711
Target:  5'- uCGUGCUUgagcACCUGGCcgacgaccACCGcGCCUUg -3'
miRNA:   3'- -GCACGAGa---UGGACCGa-------UGGC-CGGAAg -5'
18568 3' -57 NC_004682.1 + 16115 0.72 0.2562
Target:  5'- aCGggGCUCUACCgGGCgcACCGGCUg-- -3'
miRNA:   3'- -GCa-CGAGAUGGaCCGa-UGGCCGGaag -5'
18568 3' -57 NC_004682.1 + 34083 1.1 0.000481
Target:  5'- aCGUGCUCUACCUGGCUACCGGCCUUCu -3'
miRNA:   3'- -GCACGAGAUGGACCGAUGGCCGGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.