Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18568 | 5' | -56.6 | NC_004682.1 | + | 10031 | 0.69 | 0.461654 |
Target: 5'- aCCGAACGCgaaGAGAuGCGGaagUGGGACGa -3' miRNA: 3'- -GGCUUGCGg--CUCU-UGUCg--GCCCUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 50469 | 0.69 | 0.442071 |
Target: 5'- uCCGGGCGCUcccgGAGGGgAGCCgcuugGGGGCGg -3' miRNA: 3'- -GGCUUGCGG----CUCUUgUCGG-----CCCUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 8994 | 0.69 | 0.432458 |
Target: 5'- gCCGAuaAgGCCGAcGAGCAGUugUGGGACu- -3' miRNA: 3'- -GGCU--UgCGGCU-CUUGUCG--GCCCUGua -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 4412 | 0.69 | 0.426749 |
Target: 5'- gCUGGAgucCGCUGAGAGCGGagccuugguccucuaCCGGGGCGa -3' miRNA: 3'- -GGCUU---GCGGCUCUUGUC---------------GGCCCUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 2541 | 0.7 | 0.386293 |
Target: 5'- aUGGAagaCGAGAGCGGCUGGGACu- -3' miRNA: 3'- gGCUUgcgGCUCUUGUCGGCCCUGua -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 37140 | 0.7 | 0.386293 |
Target: 5'- gCCGAACGUgugcgaCGAGAucccCAGCCGGuGCGUg -3' miRNA: 3'- -GGCUUGCG------GCUCUu---GUCGGCCcUGUA- -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 45762 | 0.71 | 0.351779 |
Target: 5'- gCGggUG-CGGGAGCAGCCGGuGCGg -3' miRNA: 3'- gGCuuGCgGCUCUUGUCGGCCcUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 7670 | 0.72 | 0.289513 |
Target: 5'- gCCGAGguCGCCaAGAA-GGCCGGGACGa -3' miRNA: 3'- -GGCUU--GCGGcUCUUgUCGGCCCUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 19819 | 0.74 | 0.223677 |
Target: 5'- cCCGAuccagguCGCCGAGGcgcugauGC-GCCGGGGCGUg -3' miRNA: 3'- -GGCUu------GCGGCUCU-------UGuCGGCCCUGUA- -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 32906 | 0.75 | 0.191418 |
Target: 5'- gCGAgACGaCCGAGAACGacagguGCCGGGACGc -3' miRNA: 3'- gGCU-UGC-GGCUCUUGU------CGGCCCUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 14675 | 0.76 | 0.176633 |
Target: 5'- gUGGACGCCGAc--CGGCUGGGACAg -3' miRNA: 3'- gGCUUGCGGCUcuuGUCGGCCCUGUa -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 11142 | 0.77 | 0.134452 |
Target: 5'- gCCGAAgGUCGAGAcguuCAGCCGGGAg-- -3' miRNA: 3'- -GGCUUgCGGCUCUu---GUCGGCCCUgua -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 39356 | 0.79 | 0.107602 |
Target: 5'- gUCGAACGCCGGGGAUuucGCUGGGGCc- -3' miRNA: 3'- -GGCUUGCGGCUCUUGu--CGGCCCUGua -5' |
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18568 | 5' | -56.6 | NC_004682.1 | + | 34121 | 1.07 | 0.00104 |
Target: 5'- gCCGAACGCCGAGAACAGCCGGGACAUc -3' miRNA: 3'- -GGCUUGCGGCUCUUGUCGGCCCUGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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