miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18569 3' -62.2 NC_004682.1 + 13759 0.68 0.258656
Target:  5'- uGGAGGUCGGCaaccugauggacaugCGCCAGGCCcacuaccucaagGGUGGa- -3'
miRNA:   3'- -CCUCCGGUCG---------------GUGGUCCGG------------CUACCgc -5'
18569 3' -62.2 NC_004682.1 + 2630 0.68 0.25611
Target:  5'- cGAGGCCGGCguCCuGGUCGAgacaUGGg- -3'
miRNA:   3'- cCUCCGGUCGguGGuCCGGCU----ACCgc -5'
18569 3' -62.2 NC_004682.1 + 33929 0.68 0.243687
Target:  5'- cGAGGCCAcagcGCCgacACCGGcaccgaacgcGCCGAUGaGCGa -3'
miRNA:   3'- cCUCCGGU----CGG---UGGUC----------CGGCUAC-CGC- -5'
18569 3' -62.2 NC_004682.1 + 18014 0.68 0.243687
Target:  5'- -cAGGCggCAGCCACCA--UCGGUGGCGu -3'
miRNA:   3'- ccUCCG--GUCGGUGGUccGGCUACCGC- -5'
18569 3' -62.2 NC_004682.1 + 33786 0.68 0.243687
Target:  5'- cGGGGGCCucggcgggAGCCGCCuGGGCCucgucgucGGCa -3'
miRNA:   3'- -CCUCCGG--------UCGGUGG-UCCGGcua-----CCGc -5'
18569 3' -62.2 NC_004682.1 + 36821 0.68 0.241867
Target:  5'- aGAuGGCCGaacauGCCGCCgGGGCCGAacacaccggacggcUGGUGg -3'
miRNA:   3'- cCU-CCGGU-----CGGUGG-UCCGGCU--------------ACCGC- -5'
18569 3' -62.2 NC_004682.1 + 3971 0.68 0.237666
Target:  5'- --uGGCCAGCauCCAGGCCGAcaacaaGGCu -3'
miRNA:   3'- ccuCCGGUCGguGGUCCGGCUa-----CCGc -5'
18569 3' -62.2 NC_004682.1 + 13366 0.69 0.231769
Target:  5'- gGGGGGCCGGaugaGCCuucUCGAUGGCGg -3'
miRNA:   3'- -CCUCCGGUCgg--UGGuccGGCUACCGC- -5'
18569 3' -62.2 NC_004682.1 + 4625 0.69 0.209408
Target:  5'- uGGAGGUguggggcgaCGGCUACCuGGCCGGUGa-- -3'
miRNA:   3'- -CCUCCG---------GUCGGUGGuCCGGCUACcgc -5'
18569 3' -62.2 NC_004682.1 + 1998 0.69 0.209408
Target:  5'- cGGcGGUUGGCCcCCcgAGGCCGAcGGCGc -3'
miRNA:   3'- -CCuCCGGUCGGuGG--UCCGGCUaCCGC- -5'
18569 3' -62.2 NC_004682.1 + 17800 0.69 0.204115
Target:  5'- --cGGCCcucGCCACCgcgauGGGUCaGAUGGCGg -3'
miRNA:   3'- ccuCCGGu--CGGUGG-----UCCGG-CUACCGC- -5'
18569 3' -62.2 NC_004682.1 + 2297 0.7 0.19894
Target:  5'- -aAGGCCcccaaGGuCCGuCCGGGCCGAagGGCGa -3'
miRNA:   3'- ccUCCGG-----UC-GGU-GGUCCGGCUa-CCGC- -5'
18569 3' -62.2 NC_004682.1 + 18065 0.7 0.188931
Target:  5'- aGAGauCCAGCaCGCCAGcGCCGA-GGCGu -3'
miRNA:   3'- cCUCc-GGUCG-GUGGUC-CGGCUaCCGC- -5'
18569 3' -62.2 NC_004682.1 + 35123 0.7 0.184095
Target:  5'- ---cGCCGGCCACCAcgcacuGCgCGAUGGCGu -3'
miRNA:   3'- ccucCGGUCGGUGGUc-----CG-GCUACCGC- -5'
18569 3' -62.2 NC_004682.1 + 24542 0.71 0.157319
Target:  5'- cGGGGUCGGCCACUgcgGGGCCuGUGGa- -3'
miRNA:   3'- cCUCCGGUCGGUGG---UCCGGcUACCgc -5'
18569 3' -62.2 NC_004682.1 + 11231 0.72 0.141475
Target:  5'- aGGAGGCCAagaccGCUACgCGGGCUGA-GGUc -3'
miRNA:   3'- -CCUCCGGU-----CGGUG-GUCCGGCUaCCGc -5'
18569 3' -62.2 NC_004682.1 + 27953 0.72 0.134113
Target:  5'- aGGAuGaaGGCCACCAGGCCGAcgacGGCc -3'
miRNA:   3'- -CCUcCggUCGGUGGUCCGGCUa---CCGc -5'
18569 3' -62.2 NC_004682.1 + 10499 0.73 0.120437
Target:  5'- aGGAGGCCGGUgACgCAGGC--GUGGCc -3'
miRNA:   3'- -CCUCCGGUCGgUG-GUCCGgcUACCGc -5'
18569 3' -62.2 NC_004682.1 + 6921 0.73 0.108068
Target:  5'- aGAGGCCAGCCGCCuGGCUcccgcaGggGaGCGc -3'
miRNA:   3'- cCUCCGGUCGGUGGuCCGG------CuaC-CGC- -5'
18569 3' -62.2 NC_004682.1 + 45442 0.78 0.051191
Target:  5'- cGGGGUCGGUCACCAGGCCGcgGuCGa -3'
miRNA:   3'- cCUCCGGUCGGUGGUCCGGCuaCcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.