miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18570 3' -58 NC_004682.1 + 23899 0.66 0.528676
Target:  5'- gGGCAcCggccacacccccgAGGACg-CGGCUGCCGCg-- -3'
miRNA:   3'- -CCGUaG-------------UCCUGaaGCCGACGGCGgaa -5'
18570 3' -58 NC_004682.1 + 22873 0.66 0.51914
Target:  5'- uGGCAUCAuGGcCgucgUCGGCcugGUgGCCUUc -3'
miRNA:   3'- -CCGUAGU-CCuGa---AGCCGa--CGgCGGAA- -5'
18570 3' -58 NC_004682.1 + 21843 0.66 0.51914
Target:  5'- uGGCAgggggAGGACUgggGGCUGCUGaCCa- -3'
miRNA:   3'- -CCGUag---UCCUGAag-CCGACGGC-GGaa -5'
18570 3' -58 NC_004682.1 + 48394 0.66 0.508626
Target:  5'- cGGUAUCacccuuGGGACcuugCGGCccggUGUCGCCUg -3'
miRNA:   3'- -CCGUAG------UCCUGaa--GCCG----ACGGCGGAa -5'
18570 3' -58 NC_004682.1 + 34166 0.66 0.498202
Target:  5'- aGCucguUCAGaGACaggUCGGCUGCCGaCUc -3'
miRNA:   3'- cCGu---AGUC-CUGa--AGCCGACGGCgGAa -5'
18570 3' -58 NC_004682.1 + 35383 0.66 0.498202
Target:  5'- uGGCGUCgAGGucguccuCUUCGcGCUGCUuGCCc- -3'
miRNA:   3'- -CCGUAG-UCCu------GAAGC-CGACGG-CGGaa -5'
18570 3' -58 NC_004682.1 + 33776 0.67 0.467532
Target:  5'- aGCGacUCuucgGGGGCcUCGGCgggaGCCGCCUg -3'
miRNA:   3'- cCGU--AG----UCCUGaAGCCGa---CGGCGGAa -5'
18570 3' -58 NC_004682.1 + 26562 0.67 0.446651
Target:  5'- cGGguUCGGGugUggCGGCUuGCCcuucgcgaucuugGCCUUg -3'
miRNA:   3'- -CCguAGUCCugAa-GCCGA-CGG-------------CGGAA- -5'
18570 3' -58 NC_004682.1 + 32812 0.69 0.356661
Target:  5'- cGCcccCAGGACaacgccaccgauggUGGCUGCCGCCUg -3'
miRNA:   3'- cCGua-GUCCUGaa------------GCCGACGGCGGAa -5'
18570 3' -58 NC_004682.1 + 11492 0.7 0.285193
Target:  5'- aGGC--CGGuGCUaCGGCUGCCGCCg- -3'
miRNA:   3'- -CCGuaGUCcUGAaGCCGACGGCGGaa -5'
18570 3' -58 NC_004682.1 + 48759 0.75 0.138781
Target:  5'- cGCGUgCAGGAacaCGGCUGCCGUCUg -3'
miRNA:   3'- cCGUA-GUCCUgaaGCCGACGGCGGAa -5'
18570 3' -58 NC_004682.1 + 33888 1.07 0.000516
Target:  5'- uGGCAUCAGGACUUCGGCUGCCGCCUUg -3'
miRNA:   3'- -CCGUAGUCCUGAAGCCGACGGCGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.