miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18571 3' -51.5 NC_004682.1 + 8715 0.66 0.911851
Target:  5'- cUCAUCGCGAGGGggaCGaagUGAucuaccuGCUGGc -3'
miRNA:   3'- -AGUAGCGCUCCUagaGCa--GCU-------UGACC- -5'
18571 3' -51.5 NC_004682.1 + 20261 0.66 0.908561
Target:  5'- cCcgCGUGuGGAgcaggUCUCGUCGGAgaacggcagccagcuCUGGg -3'
miRNA:   3'- aGuaGCGCuCCU-----AGAGCAGCUU---------------GACC- -5'
18571 3' -51.5 NC_004682.1 + 21217 0.67 0.86866
Target:  5'- cCGUU-CGAGGAUCUgCGcggCGAGCUGa -3'
miRNA:   3'- aGUAGcGCUCCUAGA-GCa--GCUUGACc -5'
18571 3' -51.5 NC_004682.1 + 30184 0.67 0.851954
Target:  5'- cCGaCGCcAGGAUCUCGUCG---UGGa -3'
miRNA:   3'- aGUaGCGcUCCUAGAGCAGCuugACC- -5'
18571 3' -51.5 NC_004682.1 + 21685 0.67 0.84324
Target:  5'- uUCG-CGCGAgugucGGAUCgcCGaacUCGAACUGGa -3'
miRNA:   3'- -AGUaGCGCU-----CCUAGa-GC---AGCUUGACC- -5'
18571 3' -51.5 NC_004682.1 + 31263 0.68 0.834297
Target:  5'- ---cUGCGAGGAUCggGUCcaugcccgaguaGAGCUGGu -3'
miRNA:   3'- aguaGCGCUCCUAGagCAG------------CUUGACC- -5'
18571 3' -51.5 NC_004682.1 + 24843 0.69 0.790492
Target:  5'- cUCAUCGCGAcggcugaggacgagcGGAUCUacuUCGAGC-GGa -3'
miRNA:   3'- -AGUAGCGCU---------------CCUAGAgc-AGCUUGaCC- -5'
18571 3' -51.5 NC_004682.1 + 42417 0.7 0.723812
Target:  5'- -gGUUGcCGGGGGUCgCGUUGAcCUGGa -3'
miRNA:   3'- agUAGC-GCUCCUAGaGCAGCUuGACC- -5'
18571 3' -51.5 NC_004682.1 + 45673 0.7 0.723812
Target:  5'- gCAUCGuCGgcAGGAUCUCG-CGGGCcuUGGc -3'
miRNA:   3'- aGUAGC-GC--UCCUAGAGCaGCUUG--ACC- -5'
18571 3' -51.5 NC_004682.1 + 14311 0.71 0.635387
Target:  5'- aCGggCGUGAGGGUCUCGUUGAGa--- -3'
miRNA:   3'- aGUa-GCGCUCCUAGAGCAGCUUgacc -5'
18571 3' -51.5 NC_004682.1 + 25882 0.72 0.579647
Target:  5'- cUCGUCgGCGuuGGUCUUGUCGGucucCUGGg -3'
miRNA:   3'- -AGUAG-CGCucCUAGAGCAGCUu---GACC- -5'
18571 3' -51.5 NC_004682.1 + 33805 0.95 0.023006
Target:  5'- aUCAUCGCGAGGAUCUgcUCGAACUGGg -3'
miRNA:   3'- -AGUAGCGCUCCUAGAgcAGCUUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.