Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18571 | 5' | -59.6 | NC_004682.1 | + | 12645 | 0.66 | 0.458614 |
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Target: 5'- cGCgCUGUUCGAcguAGACgaaCUCGGcuGGACCGa -3' miRNA: 3'- -CGgGACGAGCU---UCUG---GGGCC--UCUGGC- -5' |
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| 18571 | 5' | -59.6 | NC_004682.1 | + | 15407 | 0.66 | 0.458614 |
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Target: 5'- cGUCCUGUcgaCGGAguacGACCCCGacuGGGCCGg -3' miRNA: 3'- -CGGGACGa--GCUU----CUGGGGCc--UCUGGC- -5' |
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| 18571 | 5' | -59.6 | NC_004682.1 | + | 25016 | 0.66 | 0.468295 |
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Target: 5'- gGCaUCUGCUCGcauccagggcGAGGCCaacgguCUGGAGACCu -3' miRNA: 3'- -CG-GGACGAGC----------UUCUGG------GGCCUCUGGc -5' |
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| 18571 | 5' | -59.6 | NC_004682.1 | + | 17110 | 0.66 | 0.468295 |
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Target: 5'- gGCCCcGaa-GAAGGCCCCGGccaAGGCgGc -3' miRNA: 3'- -CGGGaCgagCUUCUGGGGCC---UCUGgC- -5' |
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| 18571 | 5' | -59.6 | NC_004682.1 | + | 14339 | 0.66 | 0.47808 |
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Target: 5'- cUCCgugcgGCUCuGGAGGCgCUGcGAGGCCGg -3' miRNA: 3'- cGGGa----CGAG-CUUCUGgGGC-CUCUGGC- -5' |
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| 18571 | 5' | -59.6 | NC_004682.1 | + | 25767 | 0.66 | 0.487964 |
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Target: 5'- cCCCUGgUgUGAacagucGGACCUCGGGGuCCGg -3' miRNA: 3'- cGGGACgA-GCU------UCUGGGGCCUCuGGC- -5' |
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| 18571 | 5' | -59.6 | NC_004682.1 | + | 15443 | 0.66 | 0.508013 |
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Target: 5'- uGCCUUcGUcaUCGAGGACuCCCGcGAGgGCUGg -3' miRNA: 3'- -CGGGA-CG--AGCUUCUG-GGGC-CUC-UGGC- -5' |
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| 18571 | 5' | -59.6 | NC_004682.1 | + | 31190 | 0.66 | 0.508013 |
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Target: 5'- aGCUUgUGCUCGuagggcaccAGAUCCUGcGAGACCGc -3' miRNA: 3'- -CGGG-ACGAGCu--------UCUGGGGC-CUCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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