miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18573 3' -56.5 NC_004682.1 + 46985 0.66 0.621415
Target:  5'- cAGCuUGGCgACCUGcUUCUG-CAUCUUCg -3'
miRNA:   3'- -UCG-ACCGgUGGGU-AAGGCuGUGGAAG- -5'
18573 3' -56.5 NC_004682.1 + 35833 0.66 0.599251
Target:  5'- gAGCUGGaucgcgUCGuCCCGgcgcaCCGACGCCUUg -3'
miRNA:   3'- -UCGACC------GGU-GGGUaa---GGCUGUGGAAg -5'
18573 3' -56.5 NC_004682.1 + 26008 0.66 0.577201
Target:  5'- gAGC-GGUCuuCCAggCCGACACCa-- -3'
miRNA:   3'- -UCGaCCGGugGGUaaGGCUGUGGaag -5'
18573 3' -56.5 NC_004682.1 + 38828 0.66 0.577201
Target:  5'- aGGCUGcGCCGguaUCGUUCCGuCGCCg-- -3'
miRNA:   3'- -UCGAC-CGGUg--GGUAAGGCuGUGGaag -5'
18573 3' -56.5 NC_004682.1 + 16225 0.67 0.544491
Target:  5'- cGGCgugGGCCACCUcggcguggcgucGUUCCuGGCGCUgugCg -3'
miRNA:   3'- -UCGa--CCGGUGGG------------UAAGG-CUGUGGaa-G- -5'
18573 3' -56.5 NC_004682.1 + 2001 0.67 0.533717
Target:  5'- cGGUUGGCCcCCCGaggCCGACGgCg-- -3'
miRNA:   3'- -UCGACCGGuGGGUaa-GGCUGUgGaag -5'
18573 3' -56.5 NC_004682.1 + 2617 0.67 0.512405
Target:  5'- cGGCUGGCCGauaCgAggCCGGCGuCCUggUCg -3'
miRNA:   3'- -UCGACCGGUg--GgUaaGGCUGU-GGA--AG- -5'
18573 3' -56.5 NC_004682.1 + 18707 0.67 0.501881
Target:  5'- gAGCUGGCuuCACCCAggCCGAaAUCg-- -3'
miRNA:   3'- -UCGACCG--GUGGGUaaGGCUgUGGaag -5'
18573 3' -56.5 NC_004682.1 + 18634 0.68 0.491453
Target:  5'- aAGCUGGCCGCgCAgagCGACaACCg-- -3'
miRNA:   3'- -UCGACCGGUGgGUaagGCUG-UGGaag -5'
18573 3' -56.5 NC_004682.1 + 7211 0.68 0.470906
Target:  5'- cGCUGGCuCGCCguuCAUgCCGACGCUg-- -3'
miRNA:   3'- uCGACCG-GUGG---GUAaGGCUGUGGaag -5'
18573 3' -56.5 NC_004682.1 + 8585 0.68 0.460797
Target:  5'- cGCUGGCUACCCcggccCCGugAUCa-- -3'
miRNA:   3'- uCGACCGGUGGGuaa--GGCugUGGaag -5'
18573 3' -56.5 NC_004682.1 + 3535 0.68 0.450804
Target:  5'- cGGCUGGCCaaggACCCGcuagUCCuGGCGCUg-- -3'
miRNA:   3'- -UCGACCGG----UGGGUa---AGG-CUGUGGaag -5'
18573 3' -56.5 NC_004682.1 + 37003 0.69 0.440932
Target:  5'- aGGUUGGCCucgGCCU--UCCGGCcucgcuCCUUCg -3'
miRNA:   3'- -UCGACCGG---UGGGuaAGGCUGu-----GGAAG- -5'
18573 3' -56.5 NC_004682.1 + 23446 0.69 0.430215
Target:  5'- cGCccgUGGCCACCCGUaCCGGCGauagaauCCUcaUCu -3'
miRNA:   3'- uCG---ACCGGUGGGUAaGGCUGU-------GGA--AG- -5'
18573 3' -56.5 NC_004682.1 + 25683 0.69 0.412071
Target:  5'- cGUUGGCgACCUGUUCggugGACACCUggUCa -3'
miRNA:   3'- uCGACCGgUGGGUAAGg---CUGUGGA--AG- -5'
18573 3' -56.5 NC_004682.1 + 33717 0.7 0.358004
Target:  5'- uGGCggGaGCCGCCUuggCCGGgGCCUUCu -3'
miRNA:   3'- -UCGa-C-CGGUGGGuaaGGCUgUGGAAG- -5'
18573 3' -56.5 NC_004682.1 + 30561 0.71 0.32482
Target:  5'- gAGCUGGCUGCCguUcUCCGACgagACCUg- -3'
miRNA:   3'- -UCGACCGGUGGguA-AGGCUG---UGGAag -5'
18573 3' -56.5 NC_004682.1 + 15046 0.72 0.272379
Target:  5'- cGCUGcGCUGCCgGUUCgGGCaACCUUCc -3'
miRNA:   3'- uCGAC-CGGUGGgUAAGgCUG-UGGAAG- -5'
18573 3' -56.5 NC_004682.1 + 47769 0.73 0.226957
Target:  5'- gGGCUGGCUcgcGCCCGUUCCguugGACgGCCUg- -3'
miRNA:   3'- -UCGACCGG---UGGGUAAGG----CUG-UGGAag -5'
18573 3' -56.5 NC_004682.1 + 17243 0.79 0.096067
Target:  5'- -cCUGGCCAgCUCGggcUCCGACGCCUUCg -3'
miRNA:   3'- ucGACCGGU-GGGUa--AGGCUGUGGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.