Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18574 | 3' | -58.5 | NC_004682.1 | + | 39824 | 0.71 | 0.268745 |
Target: 5'- cGCC-CGAUGCCUCGGcuGCGc-UCUUGCc -3' miRNA: 3'- -CGGaGCUACGGAGCC--CGCuuGGGACG- -5' |
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18574 | 3' | -58.5 | NC_004682.1 | + | 43936 | 0.71 | 0.262106 |
Target: 5'- gGCCauugCGAUGcCCUCGGugaGCGGACgCUGUc -3' miRNA: 3'- -CGGa---GCUAC-GGAGCC---CGCUUGgGACG- -5' |
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18574 | 3' | -58.5 | NC_004682.1 | + | 42866 | 0.72 | 0.230307 |
Target: 5'- aGCCaguaCGAgucGCCUCGGGCGAucucgauGCCCUc- -3' miRNA: 3'- -CGGa---GCUa--CGGAGCCCGCU-------UGGGAcg -5' |
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18574 | 3' | -58.5 | NC_004682.1 | + | 30902 | 0.72 | 0.225045 |
Target: 5'- cGCCUCGGUgaucGCCUCGGcgaGCGGgucGCCCUc- -3' miRNA: 3'- -CGGAGCUA----CGGAGCC---CGCU---UGGGAcg -5' |
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18574 | 3' | -58.5 | NC_004682.1 | + | 48743 | 0.72 | 0.219319 |
Target: 5'- cCCUCGcgGaCCUUGuggacccuGCGGACCCUGCg -3' miRNA: 3'- cGGAGCuaC-GGAGCc-------CGCUUGGGACG- -5' |
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18574 | 3' | -58.5 | NC_004682.1 | + | 46467 | 0.76 | 0.135934 |
Target: 5'- gGCCUUGAcGCgCUCgcucacggucuGGGCGAAgCCUGCg -3' miRNA: 3'- -CGGAGCUaCG-GAG-----------CCCGCUUgGGACG- -5' |
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18574 | 3' | -58.5 | NC_004682.1 | + | 32608 | 1.13 | 0.000225 |
Target: 5'- gGCCUCGAUGCCUCGGGCGAACCCUGCg -3' miRNA: 3'- -CGGAGCUACGGAGCCCGCUUGGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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