Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18574 | 5' | -55.4 | NC_004682.1 | + | 42473 | 0.67 | 0.62197 |
Target: 5'- -gGCCGGGgUCGGCCucccuGCG-GCCa -3' miRNA: 3'- aaUGGCCUgAGCUGGuccu-UGCuCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 5120 | 0.67 | 0.610925 |
Target: 5'- -cACCuGGCaggagaucuucgUCGGCgAGGAGgGAGCCg -3' miRNA: 3'- aaUGGcCUG------------AGCUGgUCCUUgCUCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 21829 | 0.67 | 0.599899 |
Target: 5'- cUGCUGGA---GACCAGcGAgACGGGCCu -3' miRNA: 3'- aAUGGCCUgagCUGGUC-CU-UGCUCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 20938 | 0.67 | 0.599899 |
Target: 5'- -cGCCGGAUcggcgcguUCGGCaggucuggCGGGAGCGGGUg -3' miRNA: 3'- aaUGGCCUG--------AGCUG--------GUCCUUGCUCGg -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 37337 | 0.67 | 0.599899 |
Target: 5'- gUACCGGACU-GGCCuugcaccuGGAAuCGcGCCu -3' miRNA: 3'- aAUGGCCUGAgCUGGu-------CCUU-GCuCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 5960 | 0.68 | 0.5889 |
Target: 5'- -gGCUGGccaagUUCGGCCAGGAguacuGCaGGGCCu -3' miRNA: 3'- aaUGGCCu----GAGCUGGUCCU-----UG-CUCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 24634 | 0.68 | 0.587802 |
Target: 5'- ---aCGGGCUCcgguGCCAGGAugucgagGCGuGCCg -3' miRNA: 3'- aaugGCCUGAGc---UGGUCCU-------UGCuCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 30774 | 0.68 | 0.577938 |
Target: 5'- aUGCCGGugaUCGACau---GCGAGCCg -3' miRNA: 3'- aAUGGCCug-AGCUGguccuUGCUCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 30113 | 0.68 | 0.577938 |
Target: 5'- -cACCGGacccaucuGCUCGGCCAucaGGCGAGCg -3' miRNA: 3'- aaUGGCC--------UGAGCUGGUcc-UUGCUCGg -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 38524 | 0.68 | 0.567021 |
Target: 5'- -gAUCGGGCUCuGCCGcagcaGAGCGAGCg -3' miRNA: 3'- aaUGGCCUGAGcUGGUc----CUUGCUCGg -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 43006 | 0.68 | 0.552909 |
Target: 5'- aUGCCGGugUCGACCgccuugcccgacAGGAuguccugguacGCGucccaguccuucucGGCCa -3' miRNA: 3'- aAUGGCCugAGCUGG------------UCCU-----------UGC--------------UCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 36191 | 0.68 | 0.53462 |
Target: 5'- -gGCCGGugUCGGUCAGGuucagcgucuUGAGCUg -3' miRNA: 3'- aaUGGCCugAGCUGGUCCuu--------GCUCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 4445 | 0.69 | 0.523961 |
Target: 5'- cUACCGGGg-CGACaAGGAGCGcGCUg -3' miRNA: 3'- aAUGGCCUgaGCUGgUCCUUGCuCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 34188 | 0.69 | 0.513385 |
Target: 5'- cUGCC-GACUCcACCAGGGACucaGAGUCc -3' miRNA: 3'- aAUGGcCUGAGcUGGUCCUUG---CUCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 24537 | 0.69 | 0.502897 |
Target: 5'- aUGCuCGGGgUCGGCCAcugcGGGGCcugugGAGCCu -3' miRNA: 3'- aAUG-GCCUgAGCUGGU----CCUUG-----CUCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 19717 | 0.69 | 0.48221 |
Target: 5'- cUGCCuGGCUCcACCgAGGAGCccgcuGAGCCg -3' miRNA: 3'- aAUGGcCUGAGcUGG-UCCUUG-----CUCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 9599 | 0.69 | 0.48221 |
Target: 5'- --uCCGGGCUCGACUAcgcGGAGCuuGAGUUc -3' miRNA: 3'- aauGGCCUGAGCUGGU---CCUUG--CUCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 7914 | 0.69 | 0.481187 |
Target: 5'- -gACCGucCUCGACUucaucggGGGGccgGCGGGCCa -3' miRNA: 3'- aaUGGCcuGAGCUGG-------UCCU---UGCUCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 44370 | 0.71 | 0.413347 |
Target: 5'- -cACCGGACUuugacgCGAUCuGGGAGCGaAGCUc -3' miRNA: 3'- aaUGGCCUGA------GCUGG-UCCUUGC-UCGG- -5' |
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18574 | 5' | -55.4 | NC_004682.1 | + | 35073 | 0.71 | 0.376818 |
Target: 5'- -gACCGGuaGCUCcuugaugagGACCAGG-GCGAGCUu -3' miRNA: 3'- aaUGGCC--UGAG---------CUGGUCCuUGCUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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