miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18578 3' -52.6 NC_004682.1 + 30304 0.66 0.86306
Target:  5'- gCGCcgaGUAGGCCCGuGAGG-GGUCUa -3'
miRNA:   3'- gGUGaagCGUCCGGGC-UUCUaCUAGG- -5'
18578 3' -52.6 NC_004682.1 + 9343 0.66 0.854673
Target:  5'- cCCG-UUCGCGGGUCUGGAGucgcUGAUg- -3'
miRNA:   3'- -GGUgAAGCGUCCGGGCUUCu---ACUAgg -5'
18578 3' -52.6 NC_004682.1 + 43096 0.66 0.828108
Target:  5'- aCGCUgugCGCGuacGGCCUugcGGUGGUCCu -3'
miRNA:   3'- gGUGAa--GCGU---CCGGGcuuCUACUAGG- -5'
18578 3' -52.6 NC_004682.1 + 6976 0.66 0.828108
Target:  5'- gUAC--CGCAGGCggaacUCGAcGGUGAUCCa -3'
miRNA:   3'- gGUGaaGCGUCCG-----GGCUuCUACUAGG- -5'
18578 3' -52.6 NC_004682.1 + 20272 0.66 0.828108
Target:  5'- gCACgggcCGCGuGGCCCGAccGGGaGAUCa -3'
miRNA:   3'- gGUGaa--GCGU-CCGGGCU--UCUaCUAGg -5'
18578 3' -52.6 NC_004682.1 + 45472 0.67 0.809322
Target:  5'- aCCACUUcccgaaccgggCGUAGuGCUCGcgccAGGUGAUCUg -3'
miRNA:   3'- -GGUGAA-----------GCGUC-CGGGCu---UCUACUAGG- -5'
18578 3' -52.6 NC_004682.1 + 22342 0.67 0.779737
Target:  5'- cCCAcCUUCGCAGGUgUCGGcgcGGUGAcCCa -3'
miRNA:   3'- -GGU-GAAGCGUCCG-GGCUu--CUACUaGG- -5'
18578 3' -52.6 NC_004682.1 + 30974 0.68 0.77364
Target:  5'- gCACgucCGCAGGCCacCGAugaggccaggcauucGGAUGcgCCg -3'
miRNA:   3'- gGUGaa-GCGUCCGG--GCU---------------UCUACuaGG- -5'
18578 3' -52.6 NC_004682.1 + 28704 0.69 0.716638
Target:  5'- cCCACU-CGCGgcggcGGCgggaCGAAGAUGAcgCCg -3'
miRNA:   3'- -GGUGAaGCGU-----CCGg---GCUUCUACUa-GG- -5'
18578 3' -52.6 NC_004682.1 + 14447 0.69 0.716638
Target:  5'- gCGCUUCGUcgugggaccgAGGCCCucaccgacGAGAUGAaCCg -3'
miRNA:   3'- gGUGAAGCG----------UCCGGGc-------UUCUACUaGG- -5'
18578 3' -52.6 NC_004682.1 + 9333 0.69 0.705751
Target:  5'- gUCGCgaacgUCGCGcacaaCCUGGAGAUGGUCCc -3'
miRNA:   3'- -GGUGa----AGCGUcc---GGGCUUCUACUAGG- -5'
18578 3' -52.6 NC_004682.1 + 1805 0.69 0.683765
Target:  5'- uCUGCUaCGCGGGCaacCUGGAGAaGAUCUa -3'
miRNA:   3'- -GGUGAaGCGUCCG---GGCUUCUaCUAGG- -5'
18578 3' -52.6 NC_004682.1 + 40080 0.69 0.683765
Target:  5'- aCCGCgcccgagaggCGCuguguGGCCCGcAGAgGGUCCu -3'
miRNA:   3'- -GGUGaa--------GCGu----CCGGGCuUCUaCUAGG- -5'
18578 3' -52.6 NC_004682.1 + 12579 0.69 0.68266
Target:  5'- aCCAggUCGCGGGCacggaccCCGAAGAggagUGAcCCu -3'
miRNA:   3'- -GGUgaAGCGUCCG-------GGCUUCU----ACUaGG- -5'
18578 3' -52.6 NC_004682.1 + 8680 0.69 0.672691
Target:  5'- aCGCggccUCGCGGGgCCGAGc--GAUCCa -3'
miRNA:   3'- gGUGa---AGCGUCCgGGCUUcuaCUAGG- -5'
18578 3' -52.6 NC_004682.1 + 3549 0.7 0.650435
Target:  5'- cCCGCUaguccuggCGCuGG-CCGAGGA-GAUCCg -3'
miRNA:   3'- -GGUGAa-------GCGuCCgGGCUUCUaCUAGG- -5'
18578 3' -52.6 NC_004682.1 + 37452 0.7 0.650435
Target:  5'- gC-CUUCGUAGaccGCCCGGAccUGAUCCa -3'
miRNA:   3'- gGuGAAGCGUC---CGGGCUUcuACUAGG- -5'
18578 3' -52.6 NC_004682.1 + 41686 0.7 0.62811
Target:  5'- ----gUCGguGGCUCGAcccGGAUGAUCg -3'
miRNA:   3'- ggugaAGCguCCGGGCU---UCUACUAGg -5'
18578 3' -52.6 NC_004682.1 + 27183 0.7 0.606913
Target:  5'- cCCGCaggagggcCGCAGGCCCGucggucagggugucGAUGAUCUu -3'
miRNA:   3'- -GGUGaa------GCGUCCGGGCuu------------CUACUAGG- -5'
18578 3' -52.6 NC_004682.1 + 19018 0.7 0.605799
Target:  5'- gCAUgaggUCGCGGGCaccaCGGuaGUGAUCCg -3'
miRNA:   3'- gGUGa---AGCGUCCGg---GCUucUACUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.