miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18581 3' -56.1 NC_004682.1 + 33681 0.65 0.679778
Target:  5'- -gGugUUGGCCAGGAuguUCUCUAGCugggcaggacccgcGCCg -3'
miRNA:   3'- ggUugGGUCGGUCCU---AGAGGUCG--------------UGG- -5'
18581 3' -56.1 NC_004682.1 + 45392 0.66 0.672146
Target:  5'- gCCGGCCCAcuUCA-GAUCggCCAGCGCa -3'
miRNA:   3'- -GGUUGGGUc-GGUcCUAGa-GGUCGUGg -5'
18581 3' -56.1 NC_004682.1 + 45660 0.66 0.672146
Target:  5'- uUCAGCCCGucacgcaucgucGgCAGGAUCUCgCGG-GCCu -3'
miRNA:   3'- -GGUUGGGU------------CgGUCCUAGAG-GUCgUGG- -5'
18581 3' -56.1 NC_004682.1 + 26219 0.66 0.672146
Target:  5'- aCCGgaGCCCGuggcguucGCCGGGucggaGUCggagcacgacaCCAGCACCg -3'
miRNA:   3'- -GGU--UGGGU--------CGGUCC-----UAGa----------GGUCGUGG- -5'
18581 3' -56.1 NC_004682.1 + 24021 0.66 0.661211
Target:  5'- uUCAAguCCCGcGCCAGGGaCUC--GCACCg -3'
miRNA:   3'- -GGUU--GGGU-CGGUCCUaGAGguCGUGG- -5'
18581 3' -56.1 NC_004682.1 + 50240 0.66 0.660116
Target:  5'- uCCAGCCCGcGUCAcGGAgcaccugUCUCCguauGGCggGCCa -3'
miRNA:   3'- -GGUUGGGU-CGGU-CCU-------AGAGG----UCG--UGG- -5'
18581 3' -56.1 NC_004682.1 + 13298 0.66 0.650249
Target:  5'- cCCGACgCCGGCCcgguGGAg--CaagGGCACCg -3'
miRNA:   3'- -GGUUG-GGUCGGu---CCUagaGg--UCGUGG- -5'
18581 3' -56.1 NC_004682.1 + 17150 0.66 0.650249
Target:  5'- uCCuGCCCAGCUAGaGAacaUCcuggCCAaCACCa -3'
miRNA:   3'- -GGuUGGGUCGGUC-CU---AGa---GGUcGUGG- -5'
18581 3' -56.1 NC_004682.1 + 47371 0.66 0.646957
Target:  5'- cCCGGCCCAGCaggcugcauguuggCGuaccagguguccGGAUCgCCGGgGCCg -3'
miRNA:   3'- -GGUUGGGUCG--------------GU------------CCUAGaGGUCgUGG- -5'
18581 3' -56.1 NC_004682.1 + 45962 0.66 0.639271
Target:  5'- uUCAACUgCAGCaucgagcGGAagcUCUCCAGCGCg -3'
miRNA:   3'- -GGUUGG-GUCGgu-----CCU---AGAGGUCGUGg -5'
18581 3' -56.1 NC_004682.1 + 27988 0.66 0.639271
Target:  5'- gCCAccgcGCaCCAGCgCGGG--CUCCGGgACCu -3'
miRNA:   3'- -GGU----UG-GGUCG-GUCCuaGAGGUCgUGG- -5'
18581 3' -56.1 NC_004682.1 + 31637 0.66 0.635976
Target:  5'- cCCAACUCGaCCGGGAUCaCCcaggcuucguucggAGUGCCg -3'
miRNA:   3'- -GGUUGGGUcGGUCCUAGaGG--------------UCGUGG- -5'
18581 3' -56.1 NC_004682.1 + 21925 0.66 0.628287
Target:  5'- gCGACCagGGCCAaGAUCUgggagaCCAGgGCCa -3'
miRNA:   3'- gGUUGGg-UCGGUcCUAGA------GGUCgUGG- -5'
18581 3' -56.1 NC_004682.1 + 30300 0.67 0.617305
Target:  5'- uUCAGCgCCgaguaGGCCcgugaGGGGUCUaCCGGCAgCCg -3'
miRNA:   3'- -GGUUG-GG-----UCGG-----UCCUAGA-GGUCGU-GG- -5'
18581 3' -56.1 NC_004682.1 + 34628 0.67 0.616208
Target:  5'- -uGGCCCAcGCCGaugcgccGGuugcgaUCCAGCACCu -3'
miRNA:   3'- ggUUGGGU-CGGU-------CCuag---AGGUCGUGG- -5'
18581 3' -56.1 NC_004682.1 + 22787 0.67 0.614013
Target:  5'- cUCGGCCUgaacgaacuGGUCGGGAUCUCCgacgaagagguggaAGCgGCCc -3'
miRNA:   3'- -GGUUGGG---------UCGGUCCUAGAGG--------------UCG-UGG- -5'
18581 3' -56.1 NC_004682.1 + 17237 0.67 0.606337
Target:  5'- cCUGACCCuGGCCAGcucGggCUCCGaCGCCu -3'
miRNA:   3'- -GGUUGGG-UCGGUC---CuaGAGGUcGUGG- -5'
18581 3' -56.1 NC_004682.1 + 35812 0.67 0.595391
Target:  5'- aCCGuuUCCGGCCAGG-UCUCCuuAG-ACCc -3'
miRNA:   3'- -GGUu-GGGUCGGUCCuAGAGG--UCgUGG- -5'
18581 3' -56.1 NC_004682.1 + 21749 0.67 0.595391
Target:  5'- gCCGACCCcGCCGacAUCUcCCGGCAg- -3'
miRNA:   3'- -GGUUGGGuCGGUccUAGA-GGUCGUgg -5'
18581 3' -56.1 NC_004682.1 + 37105 0.67 0.595391
Target:  5'- aUCAGCCUGGCCA---UCUC-AGUACCg -3'
miRNA:   3'- -GGUUGGGUCGGUccuAGAGgUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.