miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18581 5' -58.9 NC_004682.1 + 10619 0.66 0.552024
Target:  5'- gCGGgugggCGCgAGUGGCCacu-GGUCGAg -3'
miRNA:   3'- aGCCa----GCGgUCGCUGGgcuuCCAGCU- -5'
18581 5' -58.9 NC_004682.1 + 24146 0.66 0.541601
Target:  5'- -aGGUCGCCaacGGUGACCgCG-AGGU-GAu -3'
miRNA:   3'- agCCAGCGG---UCGCUGG-GCuUCCAgCU- -5'
18581 5' -58.9 NC_004682.1 + 14224 0.66 0.540562
Target:  5'- gUCGGggGCUcucaaggggcuggAGCugGACCCGGAGGUCc- -3'
miRNA:   3'- -AGCCagCGG-------------UCG--CUGGGCUUCCAGcu -5'
18581 5' -58.9 NC_004682.1 + 44582 0.66 0.531245
Target:  5'- -aGG-C-CCAGa-GCCCGGAGGUCGGc -3'
miRNA:   3'- agCCaGcGGUCgcUGGGCUUCCAGCU- -5'
18581 5' -58.9 NC_004682.1 + 16677 0.66 0.530213
Target:  5'- cUCGGgCGgCAGCGgugauggGCCUGGAGGgcUCGGg -3'
miRNA:   3'- -AGCCaGCgGUCGC-------UGGGCUUCC--AGCU- -5'
18581 5' -58.9 NC_004682.1 + 43640 0.66 0.530213
Target:  5'- aCGGcgaGCCAGCGugCucaccgcCGggGGUCu- -3'
miRNA:   3'- aGCCag-CGGUCGCugG-------GCuuCCAGcu -5'
18581 5' -58.9 NC_004682.1 + 38771 0.66 0.520961
Target:  5'- gUGGUCagguuggugucgGCCAGCGACaCGAccuuGGUCGu -3'
miRNA:   3'- aGCCAG------------CGGUCGCUGgGCUu---CCAGCu -5'
18581 5' -58.9 NC_004682.1 + 2126 0.66 0.510756
Target:  5'- cCGGagaaGCCGGC--CCCGAAGG-CGAg -3'
miRNA:   3'- aGCCag--CGGUCGcuGGGCUUCCaGCU- -5'
18581 5' -58.9 NC_004682.1 + 23112 0.66 0.510756
Target:  5'- gCGGUCGCCgcguGGCGcagucACCaGAAGGUUa- -3'
miRNA:   3'- aGCCAGCGG----UCGC-----UGGgCUUCCAGcu -5'
18581 5' -58.9 NC_004682.1 + 28432 0.66 0.510756
Target:  5'- cCGGUCGCUcG-GACUCGAcGGUCu- -3'
miRNA:   3'- aGCCAGCGGuCgCUGGGCUuCCAGcu -5'
18581 5' -58.9 NC_004682.1 + 49335 0.66 0.500634
Target:  5'- cUCGGUCuUCGGCGAagUCUGAAGcUCGAa -3'
miRNA:   3'- -AGCCAGcGGUCGCU--GGGCUUCcAGCU- -5'
18581 5' -58.9 NC_004682.1 + 3246 0.67 0.490603
Target:  5'- cCGGUCGCCAGCGcguCCUccGGGagCGc -3'
miRNA:   3'- aGCCAGCGGUCGCu--GGGcuUCCa-GCu -5'
18581 5' -58.9 NC_004682.1 + 49243 0.67 0.487612
Target:  5'- aCGaGUUGCCAcuugguGCGAUCCGGGauggcgucggcgucGGUCGAc -3'
miRNA:   3'- aGC-CAGCGGU------CGCUGGGCUU--------------CCAGCU- -5'
18581 5' -58.9 NC_004682.1 + 41810 0.67 0.470828
Target:  5'- gUCGGgacucgCGCCAGCaGCgCGuAGGUCa- -3'
miRNA:   3'- -AGCCa-----GCGGUCGcUGgGCuUCCAGcu -5'
18581 5' -58.9 NC_004682.1 + 33555 0.67 0.470828
Target:  5'- cUGaGUCGCgaacguguuCAGCGACCCGGacAGGUagcCGAa -3'
miRNA:   3'- aGC-CAGCG---------GUCGCUGGGCU--UCCA---GCU- -5'
18581 5' -58.9 NC_004682.1 + 9391 0.67 0.461093
Target:  5'- gCGGUCGaCgAGCG-CCUGcguGGUCGGc -3'
miRNA:   3'- aGCCAGC-GgUCGCuGGGCuu-CCAGCU- -5'
18581 5' -58.9 NC_004682.1 + 38260 0.68 0.423263
Target:  5'- uUCGGgguccgUGCCcGCGACCUGGucGGUCa- -3'
miRNA:   3'- -AGCCa-----GCGGuCGCUGGGCUu-CCAGcu -5'
18581 5' -58.9 NC_004682.1 + 50699 0.68 0.423263
Target:  5'- gUGGcccugUGCCGGCccGugCCGgcGGUCGAg -3'
miRNA:   3'- aGCCa----GCGGUCG--CugGGCuuCCAGCU- -5'
18581 5' -58.9 NC_004682.1 + 31526 0.68 0.387357
Target:  5'- aUCGGgaugC-CCAGCgugcgcucgauGACCUGGAGGUCGu -3'
miRNA:   3'- -AGCCa---GcGGUCG-----------CUGGGCUUCCAGCu -5'
18581 5' -58.9 NC_004682.1 + 15939 0.68 0.387357
Target:  5'- aUGGUCGCCaacGGCGAgCCGggGuUCu- -3'
miRNA:   3'- aGCCAGCGG---UCGCUgGGCuuCcAGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.