miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18581 5' -58.9 NC_004682.1 + 643 0.74 0.180005
Target:  5'- cCGGUUGCCucacccaGGCGACC--GAGGUCGAc -3'
miRNA:   3'- aGCCAGCGG-------UCGCUGGgcUUCCAGCU- -5'
18581 5' -58.9 NC_004682.1 + 10619 0.66 0.552024
Target:  5'- gCGGgugggCGCgAGUGGCCacu-GGUCGAg -3'
miRNA:   3'- aGCCa----GCGgUCGCUGGgcuuCCAGCU- -5'
18581 5' -58.9 NC_004682.1 + 24146 0.66 0.541601
Target:  5'- -aGGUCGCCaacGGUGACCgCG-AGGU-GAu -3'
miRNA:   3'- agCCAGCGG---UCGCUGG-GCuUCCAgCU- -5'
18581 5' -58.9 NC_004682.1 + 16677 0.66 0.530213
Target:  5'- cUCGGgCGgCAGCGgugauggGCCUGGAGGgcUCGGg -3'
miRNA:   3'- -AGCCaGCgGUCGC-------UGGGCUUCC--AGCU- -5'
18581 5' -58.9 NC_004682.1 + 28432 0.66 0.510756
Target:  5'- cCGGUCGCUcG-GACUCGAcGGUCu- -3'
miRNA:   3'- aGCCAGCGGuCgCUGGGCUuCCAGcu -5'
18581 5' -58.9 NC_004682.1 + 23112 0.66 0.510756
Target:  5'- gCGGUCGCCgcguGGCGcagucACCaGAAGGUUa- -3'
miRNA:   3'- aGCCAGCGG----UCGC-----UGGgCUUCCAGcu -5'
18581 5' -58.9 NC_004682.1 + 2126 0.66 0.510756
Target:  5'- cCGGagaaGCCGGC--CCCGAAGG-CGAg -3'
miRNA:   3'- aGCCag--CGGUCGcuGGGCUUCCaGCU- -5'
18581 5' -58.9 NC_004682.1 + 41810 0.67 0.470828
Target:  5'- gUCGGgacucgCGCCAGCaGCgCGuAGGUCa- -3'
miRNA:   3'- -AGCCa-----GCGGUCGcUGgGCuUCCAGcu -5'
18581 5' -58.9 NC_004682.1 + 31526 0.68 0.387357
Target:  5'- aUCGGgaugC-CCAGCgugcgcucgauGACCUGGAGGUCGu -3'
miRNA:   3'- -AGCCa---GcGGUCG-----------CUGGGCUUCCAGCu -5'
18581 5' -58.9 NC_004682.1 + 19496 0.69 0.382146
Target:  5'- -gGGUCGUCauggucugcaucgcaGGCGACCCGuucuGGUaCGAg -3'
miRNA:   3'- agCCAGCGG---------------UCGCUGGGCuu--CCA-GCU- -5'
18581 5' -58.9 NC_004682.1 + 1545 0.69 0.378698
Target:  5'- gUCGGg-GCC-GUGGCCaCGAucaAGGUCGAg -3'
miRNA:   3'- -AGCCagCGGuCGCUGG-GCU---UCCAGCU- -5'
18581 5' -58.9 NC_004682.1 + 11125 0.71 0.264923
Target:  5'- aCGGaccaagGCCAG-GAgCCGAAGGUCGAg -3'
miRNA:   3'- aGCCag----CGGUCgCUgGGCUUCCAGCU- -5'
18581 5' -58.9 NC_004682.1 + 23714 0.72 0.239671
Target:  5'- -gGGUCGCUGGCGACC--GAGGUCc- -3'
miRNA:   3'- agCCAGCGGUCGCUGGgcUUCCAGcu -5'
18581 5' -58.9 NC_004682.1 + 30569 0.73 0.20034
Target:  5'- cCGGUCggGCCAcGCGGCCCGugcGGUCa- -3'
miRNA:   3'- aGCCAG--CGGU-CGCUGGGCuu-CCAGcu -5'
18581 5' -58.9 NC_004682.1 + 3246 0.67 0.490603
Target:  5'- cCGGUCGCCAGCGcguCCUccGGGagCGc -3'
miRNA:   3'- aGCCAGCGGUCGCu--GGGcuUCCa-GCu -5'
18581 5' -58.9 NC_004682.1 + 49335 0.66 0.500634
Target:  5'- cUCGGUCuUCGGCGAagUCUGAAGcUCGAa -3'
miRNA:   3'- -AGCCAGcGGUCGCU--GGGCUUCcAGCU- -5'
18581 5' -58.9 NC_004682.1 + 38771 0.66 0.520961
Target:  5'- gUGGUCagguuggugucgGCCAGCGACaCGAccuuGGUCGu -3'
miRNA:   3'- aGCCAG------------CGGUCGCUGgGCUu---CCAGCu -5'
18581 5' -58.9 NC_004682.1 + 43640 0.66 0.530213
Target:  5'- aCGGcgaGCCAGCGugCucaccgcCGggGGUCu- -3'
miRNA:   3'- aGCCag-CGGUCGCugG-------GCuuCCAGcu -5'
18581 5' -58.9 NC_004682.1 + 44582 0.66 0.531245
Target:  5'- -aGG-C-CCAGa-GCCCGGAGGUCGGc -3'
miRNA:   3'- agCCaGcGGUCgcUGGGCUUCCAGCU- -5'
18581 5' -58.9 NC_004682.1 + 27133 1.08 0.00053
Target:  5'- cUCGGUCGCCAGCGACCCGAAGGUCGAc -3'
miRNA:   3'- -AGCCAGCGGUCGCUGGGCUUCCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.