miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18582 3' -59.1 NC_004682.1 + 45387 0.66 0.533946
Target:  5'- cCGAUGCCGGCccacuucagaucgGCCaGCGcaCGCGGGu -3'
miRNA:   3'- uGCUGUGGUCG-------------UGG-CGCaaGCGCCCc -5'
18582 3' -59.1 NC_004682.1 + 37882 0.66 0.528792
Target:  5'- cCGAgAaCAGCGCCGCGaUguccgcgaaguucucUCGCGGGu -3'
miRNA:   3'- uGCUgUgGUCGUGGCGC-A---------------AGCGCCCc -5'
18582 3' -59.1 NC_004682.1 + 48221 0.66 0.513444
Target:  5'- -gGACGCCGGCcucguaucggccaGCCGCGacaccuuggucaUUgGCGGGu -3'
miRNA:   3'- ugCUGUGGUCG-------------UGGCGC------------AAgCGCCCc -5'
18582 3' -59.1 NC_004682.1 + 31041 0.67 0.484313
Target:  5'- aACGAguaguCCGGgACCGUccagaucgUCGCGGGGg -3'
miRNA:   3'- -UGCUgu---GGUCgUGGCGca------AGCGCCCC- -5'
18582 3' -59.1 NC_004682.1 + 33225 0.67 0.478384
Target:  5'- -gGGCACCAGCAgcgagcccagcguguCCGCGagCGUGGuGa -3'
miRNA:   3'- ugCUGUGGUCGU---------------GGCGCaaGCGCC-Cc -5'
18582 3' -59.1 NC_004682.1 + 42543 0.67 0.455037
Target:  5'- -gGACGgUGGCGuCCaCGUccUCGCGGGGg -3'
miRNA:   3'- ugCUGUgGUCGU-GGcGCA--AGCGCCCC- -5'
18582 3' -59.1 NC_004682.1 + 17924 0.67 0.455037
Target:  5'- aGCGuCACCGGCACCuGuCGUUCuCGGu- -3'
miRNA:   3'- -UGCuGUGGUCGUGG-C-GCAAGcGCCcc -5'
18582 3' -59.1 NC_004682.1 + 27973 0.67 0.445492
Target:  5'- gACGACgGCCAugauGcCACCGCGcaccagCGCGGGc -3'
miRNA:   3'- -UGCUG-UGGU----C-GUGGCGCaa----GCGCCCc -5'
18582 3' -59.1 NC_004682.1 + 46450 0.68 0.426744
Target:  5'- uCGGCACCGcGCuCCGCGccCGUGGcGGc -3'
miRNA:   3'- uGCUGUGGU-CGuGGCGCaaGCGCC-CC- -5'
18582 3' -59.1 NC_004682.1 + 10058 0.68 0.426744
Target:  5'- gACGACAUC-GCagACCGaUGggCGUGGGGu -3'
miRNA:   3'- -UGCUGUGGuCG--UGGC-GCaaGCGCCCC- -5'
18582 3' -59.1 NC_004682.1 + 4536 0.68 0.423973
Target:  5'- aACGGCuacgcccacgGCCAGagggauggccgcaaCGCCGCGUUCGCucGGGc -3'
miRNA:   3'- -UGCUG----------UGGUC--------------GUGGCGCAAGCGc-CCC- -5'
18582 3' -59.1 NC_004682.1 + 12335 0.68 0.408472
Target:  5'- aACGGCACCguuGGCaACCGCGUggUCgGCGucauGGGc -3'
miRNA:   3'- -UGCUGUGG---UCG-UGGCGCA--AG-CGC----CCC- -5'
18582 3' -59.1 NC_004682.1 + 16245 0.68 0.399522
Target:  5'- gGCGAUGCgAGCgACCGCuggUCGCGGu- -3'
miRNA:   3'- -UGCUGUGgUCG-UGGCGca-AGCGCCcc -5'
18582 3' -59.1 NC_004682.1 + 20636 0.69 0.365001
Target:  5'- aACGACACUGGCACaGCGUcgauucagcucUCGCuGGa -3'
miRNA:   3'- -UGCUGUGGUCGUGgCGCA-----------AGCGcCCc -5'
18582 3' -59.1 NC_004682.1 + 48819 0.69 0.356698
Target:  5'- uCGACACCcuggacggguGCGCCGuCGgccUCGgGGGGc -3'
miRNA:   3'- uGCUGUGGu---------CGUGGC-GCa--AGCgCCCC- -5'
18582 3' -59.1 NC_004682.1 + 21819 0.69 0.332596
Target:  5'- gACGACgGCCAGUACUGgGUccagUgGCaGGGGg -3'
miRNA:   3'- -UGCUG-UGGUCGUGGCgCA----AgCG-CCCC- -5'
18582 3' -59.1 NC_004682.1 + 13606 0.7 0.309711
Target:  5'- -gGACGCCgAGCACgGCGUUC-UGGGc -3'
miRNA:   3'- ugCUGUGG-UCGUGgCGCAAGcGCCCc -5'
18582 3' -59.1 NC_004682.1 + 12961 0.7 0.288045
Target:  5'- -gGACAUC-GCGgCGCGUUCuCGGGGu -3'
miRNA:   3'- ugCUGUGGuCGUgGCGCAAGcGCCCC- -5'
18582 3' -59.1 NC_004682.1 + 27558 0.7 0.288045
Target:  5'- gGCGACACUGGCGCUGCGgcagagcCGCuGGu -3'
miRNA:   3'- -UGCUGUGGUCGUGGCGCaa-----GCGcCCc -5'
18582 3' -59.1 NC_004682.1 + 26214 0.71 0.274274
Target:  5'- cUGGCACCGGaGCCcgugGCGUUCGCcGGGu -3'
miRNA:   3'- uGCUGUGGUCgUGG----CGCAAGCGcCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.