Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18583 | 3' | -59.7 | NC_004682.1 | + | 40983 | 0.71 | 0.224656 |
Target: 5'- uUGCGa-GCCaGCGGCCUgGCCAGCUc -3' miRNA: 3'- cAUGCcaCGGcUGUCGGAgCGGUCGA- -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 35930 | 0.66 | 0.431301 |
Target: 5'- uUGCGGUagaacuGCUuuGCGGCCUCGCCGccGCa -3' miRNA: 3'- cAUGCCA------CGGc-UGUCGGAGCGGU--CGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 38026 | 0.66 | 0.421892 |
Target: 5'- --uCGGUGCCGAgGuGCCUcagCGCCgacAGCg -3' miRNA: 3'- cauGCCACGGCUgU-CGGA---GCGG---UCGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 27399 | 0.67 | 0.385526 |
Target: 5'- gGUACGGgugGCCacgGGCGGCacaaUCGCCgucGGCg -3' miRNA: 3'- -CAUGCCa--CGG---CUGUCGg---AGCGG---UCGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 11797 | 0.67 | 0.376763 |
Target: 5'- --cCGGUGCCGucuCGGCgUCGuggaCCGGCg -3' miRNA: 3'- cauGCCACGGCu--GUCGgAGC----GGUCGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 47179 | 0.68 | 0.351292 |
Target: 5'- cGU-CGGUGCC----GCCUCGUCGGCg -3' miRNA: 3'- -CAuGCCACGGcuguCGGAGCGGUCGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 24926 | 0.69 | 0.296729 |
Target: 5'- --uCGGUGCUGGCccccGCUUCGCaCAGCc -3' miRNA: 3'- cauGCCACGGCUGu---CGGAGCG-GUCGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 16953 | 0.69 | 0.289494 |
Target: 5'- -gGCGGcaGCCGA-AGCCUgaUGCCAGCg -3' miRNA: 3'- caUGCCa-CGGCUgUCGGA--GCGGUCGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 43898 | 0.69 | 0.289494 |
Target: 5'- -gACGGUGUgGACuGCCUCcCCuGCg -3' miRNA: 3'- caUGCCACGgCUGuCGGAGcGGuCGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 27729 | 0.69 | 0.282398 |
Target: 5'- -gACGGUGau-GCuGUCUCGCCAGCg -3' miRNA: 3'- caUGCCACggcUGuCGGAGCGGUCGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 4404 | 0.7 | 0.236556 |
Target: 5'- -cGCGGUGCCGACaAGCUgaccgacuacaUCcCCGGCa -3' miRNA: 3'- caUGCCACGGCUG-UCGG-----------AGcGGUCGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 15724 | 0.69 | 0.296729 |
Target: 5'- aGUGCGuGgugGCCGGCGGUgUgCGCCGGUc -3' miRNA: 3'- -CAUGC-Ca--CGGCUGUCGgA-GCGGUCGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 45759 | 0.68 | 0.327068 |
Target: 5'- gGUGCgGGUGCgGgaGCAGCCggugcggCGUCGGCg -3' miRNA: 3'- -CAUG-CCACGgC--UGUCGGa------GCGGUCGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 26633 | 0.68 | 0.338216 |
Target: 5'- -gACGGUGCCcgagaugcucugguaGucgguCAGCguCUCGCCAGCg -3' miRNA: 3'- caUGCCACGG---------------Cu----GUCG--GAGCGGUCGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 47700 | 0.68 | 0.351292 |
Target: 5'- -gGCGGcUGCUGcGCcGCCUgCGCCAGUg -3' miRNA: 3'- caUGCC-ACGGC-UGuCGGA-GCGGUCGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 43009 | 0.68 | 0.351292 |
Target: 5'- --cCGGUGUCGACcGCCUUGCCcGaCa -3' miRNA: 3'- cauGCCACGGCUGuCGGAGCGGuC-Ga -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 49364 | 0.67 | 0.359645 |
Target: 5'- aGUACagGGUGCCugccgggaaguuGACGGgCUCGCC-GCUg -3' miRNA: 3'- -CAUG--CCACGG------------CUGUCgGAGCGGuCGA- -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 39013 | 0.67 | 0.359645 |
Target: 5'- --uUGGUGaUCGGCuugcgcucGGCCUCGCCGGUc -3' miRNA: 3'- cauGCCAC-GGCUG--------UCGGAGCGGUCGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 44537 | 0.67 | 0.368136 |
Target: 5'- uGUcCGGUGCCGugGaCCgugaacaGCCAGCg -3' miRNA: 3'- -CAuGCCACGGCugUcGGag-----CGGUCGa -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 25631 | 1.07 | 0.000434 |
Target: 5'- cGUACGGUGCCGACAGCCUCGCCAGCUu -3' miRNA: 3'- -CAUGCCACGGCUGUCGGAGCGGUCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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