Results 21 - 23 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18583 | 3' | -59.7 | NC_004682.1 | + | 40983 | 0.71 | 0.224656 |
Target: 5'- uUGCGa-GCCaGCGGCCUgGCCAGCUc -3' miRNA: 3'- cAUGCcaCGGcUGUCGGAgCGGUCGA- -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 19626 | 0.71 | 0.197117 |
Target: 5'- -cGCuGGUGCCGGCGGUCUCGCaGGa- -3' miRNA: 3'- caUG-CCACGGCUGUCGGAGCGgUCga -5' |
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18583 | 3' | -59.7 | NC_004682.1 | + | 25631 | 1.07 | 0.000434 |
Target: 5'- cGUACGGUGCCGACAGCCUCGCCAGCUu -3' miRNA: 3'- -CAUGCCACGGCUGUCGGAGCGGUCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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