miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18583 5' -55.2 NC_004682.1 + 36326 0.66 0.731281
Target:  5'- cGAGUGCcagGGCcgucgucgcgGGUGACGUgcuCGACCc -3'
miRNA:   3'- aCUCACG---CCG----------CUACUGCAaccGCUGG- -5'
18583 5' -55.2 NC_004682.1 + 47134 0.66 0.720667
Target:  5'- cGAGgaUGCGGaUGAUGGCuucGGCGAUg -3'
miRNA:   3'- aCUC--ACGCC-GCUACUGcaaCCGCUGg -5'
18583 5' -55.2 NC_004682.1 + 45763 0.66 0.7196
Target:  5'- cGGGUGCGGgagcagcCGGUGcgGCGUcGGCGuACg -3'
miRNA:   3'- aCUCACGCC-------GCUAC--UGCAaCCGC-UGg -5'
18583 5' -55.2 NC_004682.1 + 39405 0.66 0.709965
Target:  5'- ----gGCGGUGAUGcCGUaGGUGGCg -3'
miRNA:   3'- acucaCGCCGCUACuGCAaCCGCUGg -5'
18583 5' -55.2 NC_004682.1 + 38485 0.66 0.705662
Target:  5'- ----aGCGGUGAUGGCGUcgaucuccccuucGGUGAUCg -3'
miRNA:   3'- acucaCGCCGCUACUGCAa------------CCGCUGG- -5'
18583 5' -55.2 NC_004682.1 + 48816 0.66 0.688342
Target:  5'- cGGGuUGcCGGCGAUGACuuucgcccaGgcGGUGACg -3'
miRNA:   3'- aCUC-AC-GCCGCUACUG---------CaaCCGCUGg -5'
18583 5' -55.2 NC_004682.1 + 20123 0.66 0.688342
Target:  5'- -uGGUGCGGCGGUGcuuccUGGcCGACg -3'
miRNA:   3'- acUCACGCCGCUACugca-ACC-GCUGg -5'
18583 5' -55.2 NC_004682.1 + 34970 0.67 0.677444
Target:  5'- gGAGUGCucgcaccGCGuUGACGauuGCGACCa -3'
miRNA:   3'- aCUCACGc------CGCuACUGCaacCGCUGG- -5'
18583 5' -55.2 NC_004682.1 + 45583 0.67 0.666503
Target:  5'- -cAGcGCGGCGAgcAUGgcGGCGAUCa -3'
miRNA:   3'- acUCaCGCCGCUacUGCaaCCGCUGG- -5'
18583 5' -55.2 NC_004682.1 + 12769 0.67 0.666503
Target:  5'- uUGAG-GUcGCGGUGACcgGUUGGacCGACCc -3'
miRNA:   3'- -ACUCaCGcCGCUACUG--CAACC--GCUGG- -5'
18583 5' -55.2 NC_004682.1 + 29253 0.67 0.666503
Target:  5'- cGuGgacgGCGGCGAUGAaGUcGGCaucGGCCu -3'
miRNA:   3'- aCuCa---CGCCGCUACUgCAaCCG---CUGG- -5'
18583 5' -55.2 NC_004682.1 + 30801 0.67 0.666503
Target:  5'- cGAGccUGCaGCGGguUGAUGUUGGCGugGCa -3'
miRNA:   3'- aCUC--ACGcCGCU--ACUGCAACCGC--UGg -5'
18583 5' -55.2 NC_004682.1 + 40138 0.67 0.666503
Target:  5'- cGAGgucuaGGCc--GGCGUUGGUGGCCc -3'
miRNA:   3'- aCUCacg--CCGcuaCUGCAACCGCUGG- -5'
18583 5' -55.2 NC_004682.1 + 33729 0.67 0.644535
Target:  5'- -cAGUGCGuCGGUGACGccUUGGaacauggaGACCa -3'
miRNA:   3'- acUCACGCcGCUACUGC--AACCg-------CUGG- -5'
18583 5' -55.2 NC_004682.1 + 27757 0.67 0.644535
Target:  5'- aUGGuUGCGGgGAUcGucaggaucGCGUaGGCGACCa -3'
miRNA:   3'- -ACUcACGCCgCUA-C--------UGCAaCCGCUGG- -5'
18583 5' -55.2 NC_004682.1 + 6234 0.67 0.633529
Target:  5'- gGAGUGa-GCGcacaggGugGUUGGCGAUa -3'
miRNA:   3'- aCUCACgcCGCua----CugCAACCGCUGg -5'
18583 5' -55.2 NC_004682.1 + 37828 0.68 0.611523
Target:  5'- cGAGguaGUccgGGuCGGUGACcUUGGUGGCCa -3'
miRNA:   3'- aCUCa--CG---CC-GCUACUGcAACCGCUGG- -5'
18583 5' -55.2 NC_004682.1 + 23683 0.69 0.560214
Target:  5'- cGAGUucgaugaGUGGC--UGGCGUcgaccuucgggucgcUGGCGACCg -3'
miRNA:   3'- aCUCA-------CGCCGcuACUGCA---------------ACCGCUGG- -5'
18583 5' -55.2 NC_004682.1 + 16237 0.69 0.524897
Target:  5'- aUGAugGCGGCGAUG-CGa--GCGACCg -3'
miRNA:   3'- -ACUcaCGCCGCUACuGCaacCGCUGG- -5'
18583 5' -55.2 NC_004682.1 + 9130 0.71 0.414616
Target:  5'- gGAGaagucgGCcagGGCGGUG-CGUgagGGCGACCu -3'
miRNA:   3'- aCUCa-----CG---CCGCUACuGCAa--CCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.