Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18584 | 3' | -60.2 | NC_004682.1 | + | 12790 | 0.68 | 0.312747 |
Target: 5'- cGGCCUCCCcCaagCGauccccccgacGCCGCCAGCGa -3' miRNA: 3'- cCUGGAGGGuGagaGU-----------CGGCGGUCGC- -5' |
|||||||
18584 | 3' | -60.2 | NC_004682.1 | + | 22041 | 0.69 | 0.305319 |
Target: 5'- aGGACUgaucgcccugUCCGCUCUCGGCCugacgGCCuGUGa -3' miRNA: 3'- -CCUGGa---------GGGUGAGAGUCGG-----CGGuCGC- -5' |
|||||||
18584 | 3' | -60.2 | NC_004682.1 | + | 36599 | 0.69 | 0.298027 |
Target: 5'- uGGACCUCCgGgUC-CAGCU-CCAGCc -3' miRNA: 3'- -CCUGGAGGgUgAGaGUCGGcGGUCGc -5' |
|||||||
18584 | 3' | -60.2 | NC_004682.1 | + | 37674 | 0.71 | 0.19977 |
Target: 5'- aGGAUCUCCCACUCcucggggaagaucucCAGCuuccCGCUGGCGa -3' miRNA: 3'- -CCUGGAGGGUGAGa--------------GUCG----GCGGUCGC- -5' |
|||||||
18584 | 3' | -60.2 | NC_004682.1 | + | 46420 | 0.73 | 0.145083 |
Target: 5'- aGGACCaaggCuCCGCUCUCAGCgGacuCCAGCa -3' miRNA: 3'- -CCUGGa---G-GGUGAGAGUCGgC---GGUCGc -5' |
|||||||
18584 | 3' | -60.2 | NC_004682.1 | + | 27110 | 0.75 | 0.11366 |
Target: 5'- aGGAUCUCCagCACcugauggacCUCGGUCGCCAGCGa -3' miRNA: 3'- -CCUGGAGG--GUGa--------GAGUCGGCGGUCGC- -5' |
|||||||
18584 | 3' | -60.2 | NC_004682.1 | + | 25240 | 1.09 | 0.000302 |
Target: 5'- uGGACCUCCCACUCUCAGCCGCCAGCGc -3' miRNA: 3'- -CCUGGAGGGUGAGAGUCGGCGGUCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home