miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18585 3' -59.4 NC_004682.1 + 30516 0.69 0.336846
Target:  5'- cGGCGggACCggGUUGUGGaacCGGACGCCGu -3'
miRNA:   3'- cCUGCa-UGG--CGACGCCa--GCCUGCGGC- -5'
18585 3' -59.4 NC_004682.1 + 38623 0.71 0.285263
Target:  5'- aGGACG-ACCGUUGCcGUCGacCGCCGu -3'
miRNA:   3'- -CCUGCaUGGCGACGcCAGCcuGCGGC- -5'
18585 3' -59.4 NC_004682.1 + 32835 0.71 0.26973
Target:  5'- cGGcGCGUcgaucagauccuugACCGCUgGCGGUucgUGGACGCCc -3'
miRNA:   3'- -CC-UGCA--------------UGGCGA-CGCCA---GCCUGCGGc -5'
18585 3' -59.4 NC_004682.1 + 21791 0.71 0.258693
Target:  5'- cGACGcuCCG-UGCGGUCGGcAUGCCGc -3'
miRNA:   3'- cCUGCauGGCgACGCCAGCC-UGCGGC- -5'
18585 3' -59.4 NC_004682.1 + 24630 1.1 0.000412
Target:  5'- cGGACGUACCGCUGCGGUCGGACGCCGc -3'
miRNA:   3'- -CCUGCAUGGCGACGCCAGCCUGCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.