miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18586 5' -56.1 NC_004682.1 + 31374 0.66 0.667599
Target:  5'- aUCUUGCCCuuGCgggggucgguguagAGcgagaccuccggggaUUCACCCaACCGGa -3'
miRNA:   3'- gAGAACGGGu-CG--------------UC---------------AAGUGGG-UGGCC- -5'
18586 5' -56.1 NC_004682.1 + 11359 0.66 0.666503
Target:  5'- aUCccgGCCCA-CGGUgcgcuaCACaCCACCGGg -3'
miRNA:   3'- gAGaa-CGGGUcGUCAa-----GUG-GGUGGCC- -5'
18586 5' -56.1 NC_004682.1 + 46171 0.66 0.655529
Target:  5'- gUCggUGCCgucGCGGUcgUCACCCcguCCGGg -3'
miRNA:   3'- gAGa-ACGGgu-CGUCA--AGUGGGu--GGCC- -5'
18586 5' -56.1 NC_004682.1 + 32686 0.66 0.633529
Target:  5'- gCUCUugaccaUGCCgGGUAGcUCugCCGCCu- -3'
miRNA:   3'- -GAGA------ACGGgUCGUCaAGugGGUGGcc -5'
18586 5' -56.1 NC_004682.1 + 40531 0.66 0.633529
Target:  5'- cCUCggGCCaCAGCAGUUCcaagaACCUcaGCCa- -3'
miRNA:   3'- -GAGaaCGG-GUCGUCAAG-----UGGG--UGGcc -5'
18586 5' -56.1 NC_004682.1 + 35680 0.67 0.611523
Target:  5'- cCUgaUGCCCA-CAGguggCGUCCACCGGg -3'
miRNA:   3'- -GAgaACGGGUcGUCaa--GUGGGUGGCC- -5'
18586 5' -56.1 NC_004682.1 + 4061 0.67 0.611523
Target:  5'- ----cGCCCAGCAgGUUCugcuCCUGCaCGGu -3'
miRNA:   3'- gagaaCGGGUCGU-CAAGu---GGGUG-GCC- -5'
18586 5' -56.1 NC_004682.1 + 39463 0.67 0.589587
Target:  5'- gCUCgcuugGCCCGGUGGUguguagcgCACCguggGCCGGg -3'
miRNA:   3'- -GAGaa---CGGGUCGUCAa-------GUGGg---UGGCC- -5'
18586 5' -56.1 NC_004682.1 + 25560 0.67 0.578669
Target:  5'- gUCUUcUUCGGCAGcaCugCCACCGGc -3'
miRNA:   3'- gAGAAcGGGUCGUCaaGugGGUGGCC- -5'
18586 5' -56.1 NC_004682.1 + 33698 0.67 0.578669
Target:  5'- uCUCUaGCUgGGCAGg--ACCCgcGCCGGa -3'
miRNA:   3'- -GAGAaCGGgUCGUCaagUGGG--UGGCC- -5'
18586 5' -56.1 NC_004682.1 + 33561 0.68 0.535517
Target:  5'- -gCUcGCCCAGCAGagCGCCguuguCGCCGa -3'
miRNA:   3'- gaGAaCGGGUCGUCaaGUGG-----GUGGCc -5'
18586 5' -56.1 NC_004682.1 + 10859 0.69 0.483287
Target:  5'- ----cGCUCcGCAGUUCGuuCGCCGGg -3'
miRNA:   3'- gagaaCGGGuCGUCAAGUggGUGGCC- -5'
18586 5' -56.1 NC_004682.1 + 16413 0.69 0.44333
Target:  5'- -gCUcGCCCAGCAGagggaaCGCCCGCUGc -3'
miRNA:   3'- gaGAaCGGGUCGUCaa----GUGGGUGGCc -5'
18586 5' -56.1 NC_004682.1 + 26779 0.7 0.414616
Target:  5'- aCUCcagagGCCCAGCGGUcCAUCCcCCGc -3'
miRNA:   3'- -GAGaa---CGGGUCGUCAaGUGGGuGGCc -5'
18586 5' -56.1 NC_004682.1 + 36214 0.7 0.414616
Target:  5'- gUCUUgaGCUgAGCAGgagUCggcgcagccguGCCCACCGGg -3'
miRNA:   3'- gAGAA--CGGgUCGUCa--AG-----------UGGGUGGCC- -5'
18586 5' -56.1 NC_004682.1 + 14486 0.71 0.343928
Target:  5'- aCUCa--UCCAGCucggGGUUCGCCCACCGa -3'
miRNA:   3'- -GAGaacGGGUCG----UCAAGUGGGUGGCc -5'
18586 5' -56.1 NC_004682.1 + 11728 0.73 0.26837
Target:  5'- cCUCgauUGUCCAGCGGaUCGCCCGCaaGGu -3'
miRNA:   3'- -GAGa--ACGGGUCGUCaAGUGGGUGg-CC- -5'
18586 5' -56.1 NC_004682.1 + 9620 0.76 0.176006
Target:  5'- aUCcaagGCCCAGCAGUUCAgCgCugCGGa -3'
miRNA:   3'- gAGaa--CGGGUCGUCAAGUgG-GugGCC- -5'
18586 5' -56.1 NC_004682.1 + 2236 0.76 0.17129
Target:  5'- ----gGCCCAGCAGgu--CCCACCGGc -3'
miRNA:   3'- gagaaCGGGUCGUCaaguGGGUGGCC- -5'
18586 5' -56.1 NC_004682.1 + 32565 0.79 0.113024
Target:  5'- ---cUGCCuCAGCAGUUCGCCUGCCaGGg -3'
miRNA:   3'- gagaACGG-GUCGUCAAGUGGGUGG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.