miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18587 3' -55.6 NC_004682.1 + 20959 0.67 0.64071
Target:  5'- aGGuCUggCGGGAgcggGUGGAgaagCACCCCg -3'
miRNA:   3'- aCCcGAa-GUCCUag--CACCUa---GUGGGG- -5'
18587 3' -55.6 NC_004682.1 + 10639 0.67 0.64071
Target:  5'- aUGGGCggCGGGAUgGUcgccGaGAUCGCaCCUc -3'
miRNA:   3'- -ACCCGaaGUCCUAgCA----C-CUAGUG-GGG- -5'
18587 3' -55.6 NC_004682.1 + 14489 0.67 0.629687
Target:  5'- cGGGUccgCAGGGUCGagcacGUCACCCg -3'
miRNA:   3'- aCCCGaa-GUCCUAGCacc--UAGUGGGg -5'
18587 3' -55.6 NC_004682.1 + 50590 0.67 0.618665
Target:  5'- aGGGCaggUGGGGUacCGgguagGGGUaCACCCCg -3'
miRNA:   3'- aCCCGaa-GUCCUA--GCa----CCUA-GUGGGG- -5'
18587 3' -55.6 NC_004682.1 + 40704 0.67 0.58571
Target:  5'- gGGGCUcaggcguuUCcGGGUUGUccGGGUUACCuCCa -3'
miRNA:   3'- aCCCGA--------AGuCCUAGCA--CCUAGUGG-GG- -5'
18587 3' -55.6 NC_004682.1 + 50594 0.68 0.542349
Target:  5'- cGGGUUUCGGGAaaaccCGc--AUCACCCCc -3'
miRNA:   3'- aCCCGAAGUCCUa----GCaccUAGUGGGG- -5'
18587 3' -55.6 NC_004682.1 + 40255 0.69 0.510536
Target:  5'- gGGGag-CGGGGUCGUcuuuGAcCGCCCCg -3'
miRNA:   3'- aCCCgaaGUCCUAGCAc---CUaGUGGGG- -5'
18587 3' -55.6 NC_004682.1 + 28240 0.69 0.500103
Target:  5'- gGGGC-UCGGGugaUGUagaGGGUCGCUCCg -3'
miRNA:   3'- aCCCGaAGUCCua-GCA---CCUAGUGGGG- -5'
18587 3' -55.6 NC_004682.1 + 49736 0.69 0.479528
Target:  5'- uUGGGCUUCGGGGacUUGaGGA--GCCCa -3'
miRNA:   3'- -ACCCGAAGUCCU--AGCaCCUagUGGGg -5'
18587 3' -55.6 NC_004682.1 + 3159 0.69 0.469397
Target:  5'- -aGGCUcugUCGGGAUCGcGGAagggcaaagucaUCGCCCg -3'
miRNA:   3'- acCCGA---AGUCCUAGCaCCU------------AGUGGGg -5'
18587 3' -55.6 NC_004682.1 + 27491 0.72 0.349013
Target:  5'- uUGGGgUUCGGGuUCGgGGuaGUCACCCg -3'
miRNA:   3'- -ACCCgAAGUCCuAGCaCC--UAGUGGGg -5'
18587 3' -55.6 NC_004682.1 + 9646 0.73 0.316668
Target:  5'- cGGaGCUUC-GGAacuUCGUGGA-CGCCCUc -3'
miRNA:   3'- aCC-CGAAGuCCU---AGCACCUaGUGGGG- -5'
18587 3' -55.6 NC_004682.1 + 36335 0.74 0.245862
Target:  5'- gGGGUUaUCAGGAUCucgGUGGGcgaACCCCg -3'
miRNA:   3'- aCCCGA-AGUCCUAG---CACCUag-UGGGG- -5'
18587 3' -55.6 NC_004682.1 + 24093 1.12 0.000571
Target:  5'- cUGGGCUUCAGGAUCGUGGAUCACCCCu -3'
miRNA:   3'- -ACCCGAAGUCCUAGCACCUAGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.