miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18587 5' -59.6 NC_004682.1 + 1547 0.66 0.51485
Target:  5'- cGGGGccGuGGCCacgaucaaggucgagUCGACcgacGCCGAcgccaUCCCGg -3'
miRNA:   3'- -CCCCuuC-CCGG---------------AGCUG----UGGCU-----AGGGC- -5'
18587 5' -59.6 NC_004682.1 + 10224 0.66 0.50477
Target:  5'- aGGGGAgcgucggcacgcggcAcugcauggcucGGGCCaUCGcCGCCGGcaUCCCGg -3'
miRNA:   3'- -CCCCU---------------U-----------CCCGG-AGCuGUGGCU--AGGGC- -5'
18587 5' -59.6 NC_004682.1 + 17610 0.66 0.490804
Target:  5'- gGGGGcuGGGUUUCGGC-CUGGcCCCc -3'
miRNA:   3'- -CCCCuuCCCGGAGCUGuGGCUaGGGc -5'
18587 5' -59.6 NC_004682.1 + 43256 0.67 0.450996
Target:  5'- cGGGGGAcgagguuGcGGCCUCGAUgcgcccGCCGGcCUCGg -3'
miRNA:   3'- -CCCCUU-------C-CCGGAGCUG------UGGCUaGGGC- -5'
18587 5' -59.6 NC_004682.1 + 2342 0.67 0.442495
Target:  5'- aGGGcGAuaccGGCCcaaUCggucccaccggaGACACCGGUCCCGa -3'
miRNA:   3'- -CCC-CUuc--CCGG---AG------------CUGUGGCUAGGGC- -5'
18587 5' -59.6 NC_004682.1 + 49564 0.67 0.442495
Target:  5'- cGGGgcGGGUCUCuguuagcccuGAgccaGCCGAUCUCGg -3'
miRNA:   3'- cCCCuuCCCGGAG----------CUg---UGGCUAGGGC- -5'
18587 5' -59.6 NC_004682.1 + 2414 0.67 0.414831
Target:  5'- aGGGuccGAAGGGCgauacaggCGACACCGGgccgcaaggUCCCa -3'
miRNA:   3'- -CCC---CUUCCCGga------GCUGUGGCU---------AGGGc -5'
18587 5' -59.6 NC_004682.1 + 25574 0.68 0.391732
Target:  5'- uGGGccacgccguGGGCCUUGACgcggugggcuaccuuGCCGGUCuCCGg -3'
miRNA:   3'- cCCCuu-------CCCGGAGCUG---------------UGGCUAG-GGC- -5'
18587 5' -59.6 NC_004682.1 + 6638 0.68 0.385658
Target:  5'- aGGGGAGuGGucgauauaccugcuGCaCUCGACcCaCGAUCCCGu -3'
miRNA:   3'- -CCCCUU-CC--------------CG-GAGCUGuG-GCUAGGGC- -5'
18587 5' -59.6 NC_004682.1 + 48666 0.68 0.374544
Target:  5'- uGGGAacccgugucucccuuGGGGCCUUGugGaCCGGuaggUCCCu -3'
miRNA:   3'- cCCCU---------------UCCCGGAGCugU-GGCU----AGGGc -5'
18587 5' -59.6 NC_004682.1 + 42708 0.68 0.371168
Target:  5'- uGGuGAGGGGCUgaaUCGugcugggcugGCACCGGUUCCa -3'
miRNA:   3'- cCC-CUUCCCGG---AGC----------UGUGGCUAGGGc -5'
18587 5' -59.6 NC_004682.1 + 3176 0.69 0.330747
Target:  5'- -cGGAAGGGCaaagucaUCG-C-CCGGUCCCGc -3'
miRNA:   3'- ccCCUUCCCGg------AGCuGuGGCUAGGGC- -5'
18587 5' -59.6 NC_004682.1 + 15184 0.69 0.330747
Target:  5'- gGGGGAGGGGuuuCCUUGGCggGCCu-UCCCc -3'
miRNA:   3'- -CCCCUUCCC---GGAGCUG--UGGcuAGGGc -5'
18587 5' -59.6 NC_004682.1 + 13350 0.7 0.293662
Target:  5'- uGGGGcaacguggaucgGGGGGCCggaugagccuucUCGAUGgCGGUCCCGc -3'
miRNA:   3'- -CCCC------------UUCCCGG------------AGCUGUgGCUAGGGC- -5'
18587 5' -59.6 NC_004682.1 + 5382 0.73 0.193772
Target:  5'- cGGGAAGuggugcuucgaccgcGGCCUgGugACCGAcCCCGa -3'
miRNA:   3'- cCCCUUC---------------CCGGAgCugUGGCUaGGGC- -5'
18587 5' -59.6 NC_004682.1 + 36770 0.74 0.163964
Target:  5'- aGGGcGAGGGCCUUGucCACCGugCCCGg -3'
miRNA:   3'- -CCCcUUCCCGGAGCu-GUGGCuaGGGC- -5'
18587 5' -59.6 NC_004682.1 + 24127 1.11 0.000314
Target:  5'- aGGGGAAGGGCCUCGACACCGAUCCCGa -3'
miRNA:   3'- -CCCCUUCCCGGAGCUGUGGCUAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.