miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18588 3' -54 NC_004682.1 + 27174 0.66 0.774714
Target:  5'- -cGAACUcgccCCGC-AgGAGGGCCGCa- -3'
miRNA:   3'- gaCUUGAu---GGCGcUgUUCCUGGCGag -5'
18588 3' -54 NC_004682.1 + 40351 0.66 0.774714
Target:  5'- -cGAGCgcggucACCGCGAagccucgcuGGGCCaGCUCg -3'
miRNA:   3'- gaCUUGa-----UGGCGCUguu------CCUGG-CGAG- -5'
18588 3' -54 NC_004682.1 + 17349 0.66 0.764426
Target:  5'- aUGGACgg-CGCGAUgAAGGGCCuCUCg -3'
miRNA:   3'- gACUUGaugGCGCUG-UUCCUGGcGAG- -5'
18588 3' -54 NC_004682.1 + 17036 0.66 0.764426
Target:  5'- ----cCUGCCGaCGACGAGGcccagGCgGCUCc -3'
miRNA:   3'- gacuuGAUGGC-GCUGUUCC-----UGgCGAG- -5'
18588 3' -54 NC_004682.1 + 9680 0.66 0.753998
Target:  5'- gCUGGaucgcaagGCUGCCGCGuACAccGGGCUGCc- -3'
miRNA:   3'- -GACU--------UGAUGGCGC-UGUu-CCUGGCGag -5'
18588 3' -54 NC_004682.1 + 18284 0.66 0.753998
Target:  5'- -cGAACUGCUGaGGCAgcuccgGGaGAUCGCUCc -3'
miRNA:   3'- gaCUUGAUGGCgCUGU------UC-CUGGCGAG- -5'
18588 3' -54 NC_004682.1 + 20696 0.66 0.743441
Target:  5'- aUGAACUucaaggGCCGCGACAAgcGGAaCGUcaUCa -3'
miRNA:   3'- gACUUGA------UGGCGCUGUU--CCUgGCG--AG- -5'
18588 3' -54 NC_004682.1 + 42342 0.66 0.743441
Target:  5'- -cGAuC-ACCGCGuCcAGGaACCGCUCg -3'
miRNA:   3'- gaCUuGaUGGCGCuGuUCC-UGGCGAG- -5'
18588 3' -54 NC_004682.1 + 5254 0.66 0.743441
Target:  5'- aCUGAucgccgccauGCUcGCCGCG-CuGGGGCUGCUg -3'
miRNA:   3'- -GACU----------UGA-UGGCGCuGuUCCUGGCGAg -5'
18588 3' -54 NC_004682.1 + 19984 0.66 0.731694
Target:  5'- --cGACUGCCGCGACGGugaagucgcgccuGGAggCGCUCc -3'
miRNA:   3'- gacUUGAUGGCGCUGUU-------------CCUg-GCGAG- -5'
18588 3' -54 NC_004682.1 + 43333 0.67 0.72199
Target:  5'- -gGAACUucuCCGCGACccucucgcGGGGCCaCUCc -3'
miRNA:   3'- gaCUUGAu--GGCGCUGu-------UCCUGGcGAG- -5'
18588 3' -54 NC_004682.1 + 15566 0.67 0.72199
Target:  5'- aUGAACU-CCGCGACGAccucgcguuGACC-CUCa -3'
miRNA:   3'- gACUUGAuGGCGCUGUUc--------CUGGcGAG- -5'
18588 3' -54 NC_004682.1 + 16322 0.67 0.71112
Target:  5'- ---uGCU-CCGCGACGgcaugaaggacuGGGGCCGCg- -3'
miRNA:   3'- gacuUGAuGGCGCUGU------------UCCUGGCGag -5'
18588 3' -54 NC_004682.1 + 128 0.67 0.70017
Target:  5'- aUGGGCUcgACCGcCGGCAcGGGCCGg-- -3'
miRNA:   3'- gACUUGA--UGGC-GCUGUuCCUGGCgag -5'
18588 3' -54 NC_004682.1 + 2276 0.67 0.689152
Target:  5'- -cGAGCUGaucaGCGACAAGGguucaGCCugcGCUCg -3'
miRNA:   3'- gaCUUGAUgg--CGCUGUUCC-----UGG---CGAG- -5'
18588 3' -54 NC_004682.1 + 15578 0.67 0.676967
Target:  5'- gCUGAagACguuCgGCGGCAcggccucGGGGCCGCUg -3'
miRNA:   3'- -GACU--UGau-GgCGCUGU-------UCCUGGCGAg -5'
18588 3' -54 NC_004682.1 + 24630 0.67 0.666957
Target:  5'- -cGGACgUACCGCuGCGGucGGacGCCGCUCa -3'
miRNA:   3'- gaCUUG-AUGGCGcUGUU--CC--UGGCGAG- -5'
18588 3' -54 NC_004682.1 + 24008 0.67 0.663614
Target:  5'- -cGAACUGaaccgcuucaagucCCGCGcCAGGGACuCGCa- -3'
miRNA:   3'- gaCUUGAU--------------GGCGCuGUUCCUG-GCGag -5'
18588 3' -54 NC_004682.1 + 46074 0.68 0.655803
Target:  5'- uCUGAGC--CUGCGugGGcGGAUCGUUCg -3'
miRNA:   3'- -GACUUGauGGCGCugUU-CCUGGCGAG- -5'
18588 3' -54 NC_004682.1 + 27081 0.68 0.622249
Target:  5'- uCUGGGCUuaGCCaGgGGcCGAGGucugGCCGCUCa -3'
miRNA:   3'- -GACUUGA--UGG-CgCU-GUUCC----UGGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.