miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18589 5' -65 NC_004682.1 + 16633 0.66 0.246441
Target:  5'- cGAGCacuacGGCCAGGaCUCuGaGUCCCUGGUg -3'
miRNA:   3'- -CUCG-----CCGGUCUgGAG-C-CGGGGACCGa -5'
18589 5' -65 NC_004682.1 + 13742 0.66 0.234506
Target:  5'- uGAGaUGGCCAGGCUgaUCGGCCagaaGGCc -3'
miRNA:   3'- -CUC-GCCGGUCUGG--AGCCGGgga-CCGa -5'
18589 5' -65 NC_004682.1 + 42777 0.66 0.234506
Target:  5'- cGGGCaGaCCGGGCUUCGGUCCCaugUGGaCg -3'
miRNA:   3'- -CUCGcC-GGUCUGGAGCCGGGG---ACC-Ga -5'
18589 5' -65 NC_004682.1 + 25744 0.66 0.234506
Target:  5'- uAGCGGCUcGcCUUCGGggaucuCCCCUGGUg -3'
miRNA:   3'- cUCGCCGGuCuGGAGCC------GGGGACCGa -5'
18589 5' -65 NC_004682.1 + 39698 0.66 0.223061
Target:  5'- --cCGGCUGaacgucucGACCuUCGGCUCCUGGCc -3'
miRNA:   3'- cucGCCGGU--------CUGG-AGCCGGGGACCGa -5'
18589 5' -65 NC_004682.1 + 8980 0.66 0.217518
Target:  5'- -cGCGGUCuGugCU-GGCCCC-GGCa -3'
miRNA:   3'- cuCGCCGGuCugGAgCCGGGGaCCGa -5'
18589 5' -65 NC_004682.1 + 13832 0.66 0.217518
Target:  5'- gGAGCgaGGCCggaAGGCCgaGGCCaaCCUGGCa -3'
miRNA:   3'- -CUCG--CCGG---UCUGGagCCGG--GGACCGa -5'
18589 5' -65 NC_004682.1 + 27413 0.67 0.212093
Target:  5'- cGGGCGGCaCAaucGCCgUCGGCgCaCUGGCg -3'
miRNA:   3'- -CUCGCCG-GUc--UGG-AGCCGgG-GACCGa -5'
18589 5' -65 NC_004682.1 + 42146 0.67 0.206786
Target:  5'- uGAGCGcGUCguGGAUcgCUCGGCCCCgcgaGGCc -3'
miRNA:   3'- -CUCGC-CGG--UCUG--GAGCCGGGGa---CCGa -5'
18589 5' -65 NC_004682.1 + 10825 0.67 0.201593
Target:  5'- cGGuCGGCCAccgagGGCCUCGGCCUC-GcGCa -3'
miRNA:   3'- cUC-GCCGGU-----CUGGAGCCGGGGaC-CGa -5'
18589 5' -65 NC_004682.1 + 50373 0.67 0.196514
Target:  5'- aAGCGGCCcuggAGGCCgcuggauacCGGCCCUggaGGCc -3'
miRNA:   3'- cUCGCCGG----UCUGGa--------GCCGGGGa--CCGa -5'
18589 5' -65 NC_004682.1 + 16838 0.68 0.164009
Target:  5'- uGGCGGCUGcacccgccaucGGCCUgguggcUGGCCuCCUGGCUg -3'
miRNA:   3'- cUCGCCGGU-----------CUGGA------GCCGG-GGACCGA- -5'
18589 5' -65 NC_004682.1 + 13987 0.68 0.159363
Target:  5'- cGAGUucGGCCAccagccguccgguGugUUCGGCCCCggcGGCa -3'
miRNA:   3'- -CUCG--CCGGU-------------CugGAGCCGGGGa--CCGa -5'
18589 5' -65 NC_004682.1 + 50186 0.69 0.143835
Target:  5'- -uGUGGUC-GACCUCGGUCgCCUGGgUg -3'
miRNA:   3'- cuCGCCGGuCUGGAGCCGG-GGACCgA- -5'
18589 5' -65 NC_004682.1 + 36725 0.69 0.143835
Target:  5'- uGGUGGCCcauccuGACCaggaaUCGGUCCUUGGCc -3'
miRNA:   3'- cUCGCCGGu-----CUGG-----AGCCGGGGACCGa -5'
18589 5' -65 NC_004682.1 + 42994 0.7 0.129356
Target:  5'- -cGCGcucGCCcuugauggAGACCUCGGUCCCcGGCUc -3'
miRNA:   3'- cuCGC---CGG--------UCUGGAGCCGGGGaCCGA- -5'
18589 5' -65 NC_004682.1 + 10066 0.7 0.116234
Target:  5'- gGAGCaGGCacaGGGCCUgGGCCUCaugGGCa -3'
miRNA:   3'- -CUCG-CCGg--UCUGGAgCCGGGGa--CCGa -5'
18589 5' -65 NC_004682.1 + 21329 0.73 0.071221
Target:  5'- gGGGCaGUgAGACCgccuucggCGGCUCCUGGCUg -3'
miRNA:   3'- -CUCGcCGgUCUGGa-------GCCGGGGACCGA- -5'
18589 5' -65 NC_004682.1 + 23748 1.07 0.000142
Target:  5'- uGAGCGGCCAGACCUCGGCCCCUGGCUa -3'
miRNA:   3'- -CUCGCCGGUCUGGAGCCGGGGACCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.