miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1859 3' -57.9 NC_001347.2 + 89511 0.66 0.914102
Target:  5'- ---cCCGugACGGGCGaggauaccuuuaGCGcGCAcGGCa -3'
miRNA:   3'- agaaGGCugUGCCCGU------------UGC-CGU-CCGa -5'
1859 3' -57.9 NC_001347.2 + 193613 0.66 0.914102
Target:  5'- --cUCaGAC-CGGGCucCGGCGGGUg -3'
miRNA:   3'- agaAGgCUGuGCCCGuuGCCGUCCGa -5'
1859 3' -57.9 NC_001347.2 + 154874 0.66 0.908341
Target:  5'- gCggCCGugGCGgcGGCAGCGGCgcAGaGCg -3'
miRNA:   3'- aGaaGGCugUGC--CCGUUGCCG--UC-CGa -5'
1859 3' -57.9 NC_001347.2 + 75859 0.66 0.908341
Target:  5'- gCUUCUGuuGCGGGUGGCGcCgAGGCUu -3'
miRNA:   3'- aGAAGGCugUGCCCGUUGCcG-UCCGA- -5'
1859 3' -57.9 NC_001347.2 + 171436 0.66 0.908341
Target:  5'- gUCUUCCccuucCACcGGCAGCGGCAcGCc -3'
miRNA:   3'- -AGAAGGcu---GUGcCCGUUGCCGUcCGa -5'
1859 3' -57.9 NC_001347.2 + 117492 0.66 0.902362
Target:  5'- -----gGACGCGGGauaaGACGGCAaaGGCa -3'
miRNA:   3'- agaaggCUGUGCCCg---UUGCCGU--CCGa -5'
1859 3' -57.9 NC_001347.2 + 227944 0.66 0.902362
Target:  5'- cUUUCUGcGCGCGGGCGugcuggGCGcGCuGGCg -3'
miRNA:   3'- aGAAGGC-UGUGCCCGU------UGC-CGuCCGa -5'
1859 3' -57.9 NC_001347.2 + 30964 0.66 0.901752
Target:  5'- ---gCCGGCAUGGGUAugcauucguugagGCGGCggAGGUg -3'
miRNA:   3'- agaaGGCUGUGCCCGU-------------UGCCG--UCCGa -5'
1859 3' -57.9 NC_001347.2 + 39050 0.66 0.901752
Target:  5'- cUUUCCcggcgucgugaaaGGCACGGcGUAAUgcgGGCAGGCg -3'
miRNA:   3'- aGAAGG-------------CUGUGCC-CGUUG---CCGUCCGa -5'
1859 3' -57.9 NC_001347.2 + 193911 0.66 0.896166
Target:  5'- ----gCGGCAgGGGCAugcggccuuaGCGGCucGGGCUg -3'
miRNA:   3'- agaagGCUGUgCCCGU----------UGCCG--UCCGA- -5'
1859 3' -57.9 NC_001347.2 + 229517 0.66 0.896166
Target:  5'- gUCgcCCGcggcACACGGGCGACGa-AGGCg -3'
miRNA:   3'- -AGaaGGC----UGUGCCCGUUGCcgUCCGa -5'
1859 3' -57.9 NC_001347.2 + 87806 0.66 0.889756
Target:  5'- --gUCCGuCGCGGGCAAcuccauuugcuuCGGCGugcccGGCg -3'
miRNA:   3'- agaAGGCuGUGCCCGUU------------GCCGU-----CCGa -5'
1859 3' -57.9 NC_001347.2 + 105954 0.67 0.883136
Target:  5'- --aUCUGGCuccCGGGUAccGCGGCcGGCg -3'
miRNA:   3'- agaAGGCUGu--GCCCGU--UGCCGuCCGa -5'
1859 3' -57.9 NC_001347.2 + 85860 0.67 0.876309
Target:  5'- uUCgacgUCCGcugccagaugGCACgggGGGCGACGGCcccgaGGGCg -3'
miRNA:   3'- -AGa---AGGC----------UGUG---CCCGUUGCCG-----UCCGa -5'
1859 3' -57.9 NC_001347.2 + 46338 0.67 0.876309
Target:  5'- gUCgUCCacggGGagaACGGGCAGUGGCGGGCc -3'
miRNA:   3'- -AGaAGG----CUg--UGCCCGUUGCCGUCCGa -5'
1859 3' -57.9 NC_001347.2 + 207784 0.67 0.86928
Target:  5'- ---aCCGuguGCACGGGCuuuuGCGGagaaAGGCg -3'
miRNA:   3'- agaaGGC---UGUGCCCGu---UGCCg---UCCGa -5'
1859 3' -57.9 NC_001347.2 + 45334 0.67 0.847027
Target:  5'- gUCggCCGGCGUGGGCGgcucGCGGagacuGGGCUg -3'
miRNA:   3'- -AGaaGGCUGUGCCCGU----UGCCg----UCCGA- -5'
1859 3' -57.9 NC_001347.2 + 71704 0.67 0.847027
Target:  5'- aCUUC--GCACGGGC-ACGGCcuGCUg -3'
miRNA:   3'- aGAAGgcUGUGCCCGuUGCCGucCGA- -5'
1859 3' -57.9 NC_001347.2 + 31919 0.68 0.831278
Target:  5'- gUUUCUGGCGCagguGGGUGGCGcGCGGGUc -3'
miRNA:   3'- aGAAGGCUGUG----CCCGUUGC-CGUCCGa -5'
1859 3' -57.9 NC_001347.2 + 193725 0.68 0.831278
Target:  5'- cCUUCCcAUGCGGGaacuggccuGGCGGCGGGUa -3'
miRNA:   3'- aGAAGGcUGUGCCCg--------UUGCCGUCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.