miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1859 5' -61.6 NC_001347.2 + 228082 0.66 0.783485
Target:  5'- gACAGCGauggcgggUCCGgcgGCGUCGGGGacCGUGc -3'
miRNA:   3'- -UGUCGU--------GGGCaa-CGCGGCCCC--GCACu -5'
1859 5' -61.6 NC_001347.2 + 14957 0.66 0.783485
Target:  5'- -aGGCAgCUCGgcacGCcCCGGGGCGUGc -3'
miRNA:   3'- ugUCGU-GGGCaa--CGcGGCCCCGCACu -5'
1859 5' -61.6 NC_001347.2 + 173856 0.66 0.77476
Target:  5'- aGCAGUACUCGUUGCuGCCGcGcGCGc-- -3'
miRNA:   3'- -UGUCGUGGGCAACG-CGGCcC-CGCacu -5'
1859 5' -61.6 NC_001347.2 + 224728 0.67 0.729595
Target:  5'- cCGGCAa--GUUGCGCggugGGGGCGUGc -3'
miRNA:   3'- uGUCGUgggCAACGCGg---CCCCGCACu -5'
1859 5' -61.6 NC_001347.2 + 190664 0.67 0.729595
Target:  5'- cGCGGacgccuucguCGCCCG-UGUGCCGcGGGCGa-- -3'
miRNA:   3'- -UGUC----------GUGGGCaACGCGGC-CCCGCacu -5'
1859 5' -61.6 NC_001347.2 + 68129 0.67 0.729595
Target:  5'- -gGGCugCUGgaagucgGCggGCgGGGGCGUGAu -3'
miRNA:   3'- ugUCGugGGCaa-----CG--CGgCCCCGCACU- -5'
1859 5' -61.6 NC_001347.2 + 122655 0.67 0.720308
Target:  5'- aACGGCGCCaCGUUcccacgggacGCGCUccuGGGGCGc-- -3'
miRNA:   3'- -UGUCGUGG-GCAA----------CGCGG---CCCCGCacu -5'
1859 5' -61.6 NC_001347.2 + 190763 0.67 0.70154
Target:  5'- cGCGGCGacaugCCGUUGCGCUGggccauGGGCGccgGAc -3'
miRNA:   3'- -UGUCGUg----GGCAACGCGGC------CCCGCa--CU- -5'
1859 5' -61.6 NC_001347.2 + 94112 0.68 0.672064
Target:  5'- cGCAGCACggccggaacccugCCGcggacUGCGCCGGGGgGcGGc -3'
miRNA:   3'- -UGUCGUG-------------GGCa----ACGCGGCCCCgCaCU- -5'
1859 5' -61.6 NC_001347.2 + 87848 0.68 0.653847
Target:  5'- cGCGGCGUCCG--GCGUCGGGG-GUGGc -3'
miRNA:   3'- -UGUCGUGGGCaaCGCGGCCCCgCACU- -5'
1859 5' -61.6 NC_001347.2 + 228799 0.68 0.62499
Target:  5'- gACuGUACCUGgcgcuggGCGCCGGGuuccGCGUGu -3'
miRNA:   3'- -UGuCGUGGGCaa-----CGCGGCCC----CGCACu -5'
1859 5' -61.6 NC_001347.2 + 78412 0.68 0.622103
Target:  5'- gACGGCGCCCGguguccggacgGCGCCGcaGGGUuccuccgacaacgGUGAu -3'
miRNA:   3'- -UGUCGUGGGCaa---------CGCGGC--CCCG-------------CACU- -5'
1859 5' -61.6 NC_001347.2 + 41301 0.69 0.605764
Target:  5'- gACGGCGCC-GUUGC-CCGGGGauaUGAa -3'
miRNA:   3'- -UGUCGUGGgCAACGcGGCCCCgc-ACU- -5'
1859 5' -61.6 NC_001347.2 + 186248 0.7 0.502446
Target:  5'- gACGGCAgCgGUggugGCGCUGGGG-GUGGc -3'
miRNA:   3'- -UGUCGUgGgCAa---CGCGGCCCCgCACU- -5'
1859 5' -61.6 NC_001347.2 + 228579 0.7 0.502446
Target:  5'- gACGGCGCUCGgacgggagcUGCGCCGGcGGUGg-- -3'
miRNA:   3'- -UGUCGUGGGCa--------ACGCGGCC-CCGCacu -5'
1859 5' -61.6 NC_001347.2 + 106031 0.71 0.484423
Target:  5'- uGCAcGCGCCCGguaucUGCGCCcucauaguGGGCGUGc -3'
miRNA:   3'- -UGU-CGUGGGCa----ACGCGGc-------CCCGCACu -5'
1859 5' -61.6 NC_001347.2 + 68337 0.71 0.484423
Target:  5'- uCAGCGCCUug-GCGUCGGGG-GUGGu -3'
miRNA:   3'- uGUCGUGGGcaaCGCGGCCCCgCACU- -5'
1859 5' -61.6 NC_001347.2 + 92091 0.71 0.449348
Target:  5'- -uGGCGCCCGUagGCGCgcggguuuuUGGGGUGUGu -3'
miRNA:   3'- ugUCGUGGGCAa-CGCG---------GCCCCGCACu -5'
1859 5' -61.6 NC_001347.2 + 152681 0.72 0.412442
Target:  5'- -gAGCGCCuCGUUGCGCCagagcgugcaaacGGGCGUGc -3'
miRNA:   3'- ugUCGUGG-GCAACGCGGc------------CCCGCACu -5'
1859 5' -61.6 NC_001347.2 + 71629 0.75 0.285067
Target:  5'- gACGGCGcCCCGcUGUGUCGGGGCGc-- -3'
miRNA:   3'- -UGUCGU-GGGCaACGCGGCCCCGCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.