Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18591 | 3' | -55.7 | NC_004682.1 | + | 10610 | 0.66 | 0.643617 |
|
Target: 5'- gCAUCAuUCG-CGGGUGGGcgcgaGUGGCCAc -3' miRNA: 3'- -GUAGU-GGCaGUCCACUCaa---CGCCGGU- -5' |
|||||||
| 18591 | 3' | -55.7 | NC_004682.1 | + | 47581 | 0.67 | 0.599251 |
|
Target: 5'- --cCGCCGccacCGGGUGGGUUGCcugcGCCGc -3' miRNA: 3'- guaGUGGCa---GUCCACUCAACGc---CGGU- -5' |
|||||||
| 18591 | 3' | -55.7 | NC_004682.1 | + | 27391 | 0.67 | 0.588207 |
|
Target: 5'- cUAUCGCCGguaCGGGUGGccacggGCGGCaCAa -3' miRNA: 3'- -GUAGUGGCa--GUCCACUcaa---CGCCG-GU- -5' |
|||||||
| 18591 | 3' | -55.7 | NC_004682.1 | + | 16051 | 0.67 | 0.56624 |
|
Target: 5'- ---gACCuaauGUCAGGUgGAGcagGCGGCCAg -3' miRNA: 3'- guagUGG----CAGUCCA-CUCaa-CGCCGGU- -5' |
|||||||
| 18591 | 3' | -55.7 | NC_004682.1 | + | 36936 | 0.68 | 0.54449 |
|
Target: 5'- gGUCACCcucGUCAGGUGAuc--CGGCCc -3' miRNA: 3'- gUAGUGG---CAGUCCACUcaacGCCGGu -5' |
|||||||
| 18591 | 3' | -55.7 | NC_004682.1 | + | 38099 | 0.71 | 0.349489 |
|
Target: 5'- gAUCGCCGUUGGG-GaAGUUGaGGCCGa -3' miRNA: 3'- gUAGUGGCAGUCCaC-UCAACgCCGGU- -5' |
|||||||
| 18591 | 3' | -55.7 | NC_004682.1 | + | 44614 | 0.72 | 0.316104 |
|
Target: 5'- -cUCACCGUCGaccaccuGGUGGG-UGCGGCg- -3' miRNA: 3'- guAGUGGCAGU-------CCACUCaACGCCGgu -5' |
|||||||
| 18591 | 3' | -55.7 | NC_004682.1 | + | 12369 | 0.73 | 0.256697 |
|
Target: 5'- cCAUCACCGcUCAGGUGuguggcaucccgacGGUggGCGuGCCAg -3' miRNA: 3'- -GUAGUGGC-AGUCCAC--------------UCAa-CGC-CGGU- -5' |
|||||||
| 18591 | 3' | -55.7 | NC_004682.1 | + | 23125 | 1.08 | 0.000857 |
|
Target: 5'- gCAUCACCGUCAGGUGAGUUGCGGCCAg -3' miRNA: 3'- -GUAGUGGCAGUCCACUCAACGCCGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home