miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18592 3' -55.9 NC_004682.1 + 6550 0.66 0.692046
Target:  5'- --aCGAGaACGUGGCCGA---CCUCu -3'
miRNA:   3'- guaGCUCcUGCACCGGCUcuaGGAGu -5'
18592 3' -55.9 NC_004682.1 + 14436 0.66 0.680091
Target:  5'- --cCGAGGAggacgcgcuucguCGUGGgaCCGAGGcCCUCAc -3'
miRNA:   3'- guaGCUCCU-------------GCACC--GGCUCUaGGAGU- -5'
18592 3' -55.9 NC_004682.1 + 14739 0.66 0.65932
Target:  5'- -uUCGAcGGugGUGacaCCGAGGUCCg-- -3'
miRNA:   3'- guAGCU-CCugCACc--GGCUCUAGGagu -5'
18592 3' -55.9 NC_004682.1 + 33018 0.66 0.65932
Target:  5'- aCGUCGAGGAUGUGcuugagguaGUCGAcGUUCUCc -3'
miRNA:   3'- -GUAGCUCCUGCAC---------CGGCUcUAGGAGu -5'
18592 3' -55.9 NC_004682.1 + 19336 0.66 0.65932
Target:  5'- gAUgGAGGACauGUGGCCGaAGGUCa--- -3'
miRNA:   3'- gUAgCUCCUG--CACCGGC-UCUAGgagu -5'
18592 3' -55.9 NC_004682.1 + 1543 0.67 0.626367
Target:  5'- uCGUCGGGGcCGUGGCCacGAUCaaggUCGa -3'
miRNA:   3'- -GUAGCUCCuGCACCGGcuCUAGg---AGU- -5'
18592 3' -55.9 NC_004682.1 + 34500 0.67 0.626367
Target:  5'- uCGUUGAGGGCGcGGCCccaGUCCUUc -3'
miRNA:   3'- -GUAGCUCCUGCaCCGGcucUAGGAGu -5'
18592 3' -55.9 NC_004682.1 + 11311 0.7 0.427648
Target:  5'- gCGUCGAcuGCGUGGCCGAGGgaaUCAc -3'
miRNA:   3'- -GUAGCUccUGCACCGGCUCUaggAGU- -5'
18592 3' -55.9 NC_004682.1 + 9235 0.7 0.418168
Target:  5'- cCAUCGAGGACGaggaaGGCaaCGAGGUCaUCGg -3'
miRNA:   3'- -GUAGCUCCUGCa----CCG--GCUCUAGgAGU- -5'
18592 3' -55.9 NC_004682.1 + 18594 0.74 0.238435
Target:  5'- gGUCGAGGACGUGGuUCGGGAgaacgCCg-- -3'
miRNA:   3'- gUAGCUCCUGCACC-GGCUCUa----GGagu -5'
18592 3' -55.9 NC_004682.1 + 22798 1.08 0.000904
Target:  5'- cCAUCGAGGACGUGGCCGAGAUCCUCAa -3'
miRNA:   3'- -GUAGCUCCUGCACCGGCUCUAGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.