miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18593 3' -58.3 NC_004682.1 + 24617 0.66 0.579151
Target:  5'- cCGACCCg--GCGaaCGCCaCGGGCUCCg -3'
miRNA:   3'- -GCUGGGagaUGUa-GUGG-GCUCGGGGg -5'
18593 3' -58.3 NC_004682.1 + 13445 0.66 0.579151
Target:  5'- gCGGCCUcgggagUACcUCACCCGGuacGCCCCg -3'
miRNA:   3'- -GCUGGGag----AUGuAGUGGGCU---CGGGGg -5'
18593 3' -58.3 NC_004682.1 + 29866 0.66 0.56853
Target:  5'- aGGCCCUCggggUGCuucucCACCCGcuCCCgCCa -3'
miRNA:   3'- gCUGGGAG----AUGua---GUGGGCucGGG-GG- -5'
18593 3' -58.3 NC_004682.1 + 17283 0.66 0.566411
Target:  5'- aCGGCgCUCUGCugggcgagcuguUCACUCGGGUCCa- -3'
miRNA:   3'- -GCUGgGAGAUGu-----------AGUGGGCUCGGGgg -5'
18593 3' -58.3 NC_004682.1 + 47047 0.66 0.565353
Target:  5'- aCGACCCUCggauucgaguacggUGCAUCGgguUCCGAuGCCaacgCCg -3'
miRNA:   3'- -GCUGGGAG--------------AUGUAGU---GGGCU-CGGg---GG- -5'
18593 3' -58.3 NC_004682.1 + 37284 0.66 0.536991
Target:  5'- aGACCUUCU-CGg-ACUCGaAGCCCUCg -3'
miRNA:   3'- gCUGGGAGAuGUagUGGGC-UCGGGGG- -5'
18593 3' -58.3 NC_004682.1 + 50398 0.66 0.526609
Target:  5'- cCGGCCCuggaggccgguUCUAUGUCAaguaugaCCG-GCCCUCg -3'
miRNA:   3'- -GCUGGG-----------AGAUGUAGUg------GGCuCGGGGG- -5'
18593 3' -58.3 NC_004682.1 + 10746 0.66 0.526609
Target:  5'- gGACCCUCUGCGggcCACacaGcGCCUCUc -3'
miRNA:   3'- gCUGGGAGAUGUa--GUGgg-CuCGGGGG- -5'
18593 3' -58.3 NC_004682.1 + 46340 0.67 0.516304
Target:  5'- aGuACCUUCUccgucaucGCGUCAggcCCCGgaagaucuccAGCCCCCu -3'
miRNA:   3'- gC-UGGGAGA--------UGUAGU---GGGC----------UCGGGGG- -5'
18593 3' -58.3 NC_004682.1 + 7392 0.67 0.495944
Target:  5'- -uGCCCUggccgagacCUACggCA-UCGAGCCCCCg -3'
miRNA:   3'- gcUGGGA---------GAUGuaGUgGGCUCGGGGG- -5'
18593 3' -58.3 NC_004682.1 + 17377 0.67 0.475955
Target:  5'- aGACCCUCgacgGCGUCACCaaccuGUucaCCCg -3'
miRNA:   3'- gCUGGGAGa---UGUAGUGGgcu--CGg--GGG- -5'
18593 3' -58.3 NC_004682.1 + 3350 0.68 0.456376
Target:  5'- aCGACCuCUC-GCAUCACCUacaaCCCCUa -3'
miRNA:   3'- -GCUGG-GAGaUGUAGUGGGcuc-GGGGG- -5'
18593 3' -58.3 NC_004682.1 + 32570 0.68 0.437237
Target:  5'- aCGACCCUCUGCGcgGCaCCGAcaGCCaggucgauaCCg -3'
miRNA:   3'- -GCUGGGAGAUGUagUG-GGCU--CGGg--------GG- -5'
18593 3' -58.3 NC_004682.1 + 43344 0.68 0.427843
Target:  5'- gCGACCCUCUcGCGggGCCacu-CCCCCa -3'
miRNA:   3'- -GCUGGGAGA-UGUagUGGgcucGGGGG- -5'
18593 3' -58.3 NC_004682.1 + 39690 0.68 0.427843
Target:  5'- gCGGCa----GCGUCAUCCG-GCCCCCa -3'
miRNA:   3'- -GCUGggagaUGUAGUGGGCuCGGGGG- -5'
18593 3' -58.3 NC_004682.1 + 1835 0.68 0.409418
Target:  5'- -cGCCCgUCcggGCGUCugCuCGGGCuCCCCg -3'
miRNA:   3'- gcUGGG-AGa--UGUAGugG-GCUCG-GGGG- -5'
18593 3' -58.3 NC_004682.1 + 40332 0.69 0.374091
Target:  5'- gCGACCUgggccacgcCUGCGUCACC--GGCCUCCu -3'
miRNA:   3'- -GCUGGGa--------GAUGUAGUGGgcUCGGGGG- -5'
18593 3' -58.3 NC_004682.1 + 12611 0.69 0.354736
Target:  5'- uGACCCUCccuugACAgagaacgggccggggGCCUaGAGCCCCCg -3'
miRNA:   3'- gCUGGGAGa----UGUag-------------UGGG-CUCGGGGG- -5'
18593 3' -58.3 NC_004682.1 + 30117 0.7 0.332929
Target:  5'- gGACCCaUCUGCucggccAUCAggcgagcgaucuCCUGAGCgCCCCa -3'
miRNA:   3'- gCUGGG-AGAUG------UAGU------------GGGCUCG-GGGG- -5'
18593 3' -58.3 NC_004682.1 + 34132 0.7 0.332929
Target:  5'- aGAacagCCgggACAUCgACCCGAGCCCuCCa -3'
miRNA:   3'- gCUg---GGagaUGUAG-UGGGCUCGGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.