miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18593 5' -55.8 NC_004682.1 + 15466 0.66 0.63445
Target:  5'- gCGAGGGCUGggCGGCuGCC-CUGGu- -3'
miRNA:   3'- aGCUUUCGACuaGCUG-CGGcGGCCuu -5'
18593 5' -55.8 NC_004682.1 + 4701 0.68 0.546436
Target:  5'- cUCGGugcuGCUGucgcUCGGCGCUGCCGa-- -3'
miRNA:   3'- -AGCUuu--CGACu---AGCUGCGGCGGCcuu -5'
18593 5' -55.8 NC_004682.1 + 19294 0.68 0.546436
Target:  5'- gUCGAGAucCUGAaCGACGCUGCCauuGGAc -3'
miRNA:   3'- -AGCUUUc-GACUaGCUGCGGCGG---CCUu -5'
18593 5' -55.8 NC_004682.1 + 50346 0.68 0.524953
Target:  5'- -gGgcGGCgcGUCGgugaGCGCCGCCGGAAg -3'
miRNA:   3'- agCuuUCGacUAGC----UGCGGCGGCCUU- -5'
18593 5' -55.8 NC_004682.1 + 38825 0.68 0.523887
Target:  5'- -gGAAGGCUGcgccgguAUCGuuccguCGCCGCcCGGAGa -3'
miRNA:   3'- agCUUUCGAC-------UAGCu-----GCGGCG-GCCUU- -5'
18593 5' -55.8 NC_004682.1 + 44718 0.68 0.514331
Target:  5'- cUCGucGGGCaUGc-CGACGCCGCCGGu- -3'
miRNA:   3'- -AGCu-UUCG-ACuaGCUGCGGCGGCCuu -5'
18593 5' -55.8 NC_004682.1 + 5599 0.68 0.514331
Target:  5'- aUCGaAGAGCgGAUCG-C-CCGCUGGAAc -3'
miRNA:   3'- -AGC-UUUCGaCUAGCuGcGGCGGCCUU- -5'
18593 5' -55.8 NC_004682.1 + 8634 0.68 0.493359
Target:  5'- gCGGcAAGaaGAUUGACGCCGCCGu-- -3'
miRNA:   3'- aGCU-UUCgaCUAGCUGCGGCGGCcuu -5'
18593 5' -55.8 NC_004682.1 + 31910 0.69 0.483021
Target:  5'- -aGAGAGCg---CGcCGUCGCCGGAGa -3'
miRNA:   3'- agCUUUCGacuaGCuGCGGCGGCCUU- -5'
18593 5' -55.8 NC_004682.1 + 47828 0.7 0.433004
Target:  5'- gCGuu-GCUGAccacgggaugUCGACGCCGCguCGGAGg -3'
miRNA:   3'- aGCuuuCGACU----------AGCUGCGGCG--GCCUU- -5'
18593 5' -55.8 NC_004682.1 + 18003 0.7 0.40448
Target:  5'- gCGGucAAGgauCUGAUCGACG-CGCCGGGAc -3'
miRNA:   3'- aGCU--UUC---GACUAGCUGCgGCGGCCUU- -5'
18593 5' -55.8 NC_004682.1 + 30195 0.72 0.302972
Target:  5'- gCGAGAGCUGaAUCGACGCUguGCCa--- -3'
miRNA:   3'- aGCUUUCGAC-UAGCUGCGG--CGGccuu -5'
18593 5' -55.8 NC_004682.1 + 22636 1.06 0.001171
Target:  5'- gUCGAAAGCUGAUCGACGCCGCCGGAAu -3'
miRNA:   3'- -AGCUUUCGACUAGCUGCGGCGGCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.