miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18594 3' -57.3 NC_004682.1 + 20528 0.66 0.596048
Target:  5'- uGCCGGUagaccccucaCGGGCCUacucgGCGCUGAAcuACCu -3'
miRNA:   3'- gUGGCCGg---------GUUCGGA-----CGUGGCUU--UGG- -5'
18594 3' -57.3 NC_004682.1 + 30987 0.66 0.596048
Target:  5'- cCACCGaugaGgCCAGGCauucggaUGCGCCGGuucGCCu -3'
miRNA:   3'- -GUGGC----CgGGUUCGg------ACGUGGCUu--UGG- -5'
18594 3' -57.3 NC_004682.1 + 28904 0.66 0.596048
Target:  5'- -uUCGGUgCAGGCUUGgGCCGGugAAUCa -3'
miRNA:   3'- guGGCCGgGUUCGGACgUGGCU--UUGG- -5'
18594 3' -57.3 NC_004682.1 + 25579 0.66 0.596048
Target:  5'- cCACCGGCUgAGGUgugUGCGCUGGcGGCUg -3'
miRNA:   3'- -GUGGCCGGgUUCGg--ACGUGGCU-UUGG- -5'
18594 3' -57.3 NC_004682.1 + 8277 0.66 0.594959
Target:  5'- gCGCCGGaaaCUCAcucaguuGGCCgcagagGCGCCGccGAGCCa -3'
miRNA:   3'- -GUGGCC---GGGU-------UCGGa-----CGUGGC--UUUGG- -5'
18594 3' -57.3 NC_004682.1 + 48981 0.66 0.585176
Target:  5'- cUugCGGCCCGauggGGCCggggaGC-CCGAGcagacGCCc -3'
miRNA:   3'- -GugGCCGGGU----UCGGa----CGuGGCUU-----UGG- -5'
18594 3' -57.3 NC_004682.1 + 10104 0.66 0.585176
Target:  5'- gGCCGGUCCAGaUCgagaaGCA-CGAAGCCg -3'
miRNA:   3'- gUGGCCGGGUUcGGa----CGUgGCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 48223 0.66 0.585176
Target:  5'- aCGCCGGCCuCGuaucGGCCaGC-CgCGAcACCu -3'
miRNA:   3'- -GUGGCCGG-GU----UCGGaCGuG-GCUuUGG- -5'
18594 3' -57.3 NC_004682.1 + 24503 0.66 0.585176
Target:  5'- cCGCUGGCaucagCCAGGUCgGCGCgGAcuACCg -3'
miRNA:   3'- -GUGGCCG-----GGUUCGGaCGUGgCUu-UGG- -5'
18594 3' -57.3 NC_004682.1 + 6707 0.66 0.563558
Target:  5'- gACCGGCUCGaagGGCUggagaagGCACCGuucgagauCCg -3'
miRNA:   3'- gUGGCCGGGU---UCGGa------CGUGGCuuu-----GG- -5'
18594 3' -57.3 NC_004682.1 + 30161 0.66 0.563558
Target:  5'- cCACUGcGCCUuguCCUcggGCACCGAcGCCa -3'
miRNA:   3'- -GUGGC-CGGGuucGGA---CGUGGCUuUGG- -5'
18594 3' -57.3 NC_004682.1 + 20175 0.66 0.557112
Target:  5'- cUACCaGGCCCAggaacuccgcguccuGGCC-GCGCUGucgggcGACCg -3'
miRNA:   3'- -GUGG-CCGGGU---------------UCGGaCGUGGCu-----UUGG- -5'
18594 3' -57.3 NC_004682.1 + 36964 0.66 0.552827
Target:  5'- aACCGGCCUcGGU--GgAUCGGAACCg -3'
miRNA:   3'- gUGGCCGGGuUCGgaCgUGGCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 22570 0.66 0.552827
Target:  5'- aCGCCGGCCCcgAAGCCga---UGAGGCUu -3'
miRNA:   3'- -GUGGCCGGG--UUCGGacgugGCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 17832 0.66 0.552827
Target:  5'- gGCuCGGUcaUCAAGCUcGCGCCGAuguugaucAGCCa -3'
miRNA:   3'- gUG-GCCG--GGUUCGGaCGUGGCU--------UUGG- -5'
18594 3' -57.3 NC_004682.1 + 5253 0.66 0.550688
Target:  5'- gACCGGCCaCGAGuCCgacgacuuccggGCcACCGAGgaguacGCCa -3'
miRNA:   3'- gUGGCCGG-GUUC-GGa-----------CG-UGGCUU------UGG- -5'
18594 3' -57.3 NC_004682.1 + 47371 0.67 0.542158
Target:  5'- -cCCGGCCCAgcAGgCUGCAUguUGGcguACCa -3'
miRNA:   3'- guGGCCGGGU--UCgGACGUG--GCUu--UGG- -5'
18594 3' -57.3 NC_004682.1 + 7372 0.67 0.542158
Target:  5'- uCugCGGCCCcguAGCCUucucGCACUucGACg -3'
miRNA:   3'- -GugGCCGGGu--UCGGA----CGUGGcuUUGg -5'
18594 3' -57.3 NC_004682.1 + 6117 0.67 0.542158
Target:  5'- uGCUGGCCCGcuacgcGGCCUaCGCCaAGGCg -3'
miRNA:   3'- gUGGCCGGGU------UCGGAcGUGGcUUUGg -5'
18594 3' -57.3 NC_004682.1 + 23142 0.67 0.542158
Target:  5'- gUugCGGCCagGAGCCacaGCGgCGGGAUCg -3'
miRNA:   3'- -GugGCCGGg-UUCGGa--CGUgGCUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.