miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18594 3' -57.3 NC_004682.1 + 18862 0.67 0.542158
Target:  5'- aGCCGGUCCAgauGGCCgucGCcuucauggcgaGCUGGGACUc -3'
miRNA:   3'- gUGGCCGGGU---UCGGa--CG-----------UGGCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 47587 0.67 0.531558
Target:  5'- cCACCGGgUgGguuGCCUGCGCC---GCCg -3'
miRNA:   3'- -GUGGCCgGgUu--CGGACGUGGcuuUGG- -5'
18594 3' -57.3 NC_004682.1 + 1753 0.67 0.531558
Target:  5'- cCAUCGGgUCGgcAGuucuCCUGCACUGAAGCUa -3'
miRNA:   3'- -GUGGCCgGGU--UC----GGACGUGGCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 38573 0.67 0.531558
Target:  5'- uCACCGGCCUgcGUCaUGUACUu--GCCa -3'
miRNA:   3'- -GUGGCCGGGuuCGG-ACGUGGcuuUGG- -5'
18594 3' -57.3 NC_004682.1 + 46344 0.67 0.531558
Target:  5'- --gCGGcCCCGAGCC--CGCCGGGugCg -3'
miRNA:   3'- gugGCC-GGGUUCGGacGUGGCUUugG- -5'
18594 3' -57.3 NC_004682.1 + 21524 0.67 0.531558
Target:  5'- aCACCGGCaUCAAGuCCUcggaguucaaGUACuaCGAGGCCa -3'
miRNA:   3'- -GUGGCCG-GGUUC-GGA----------CGUG--GCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 15907 0.67 0.531558
Target:  5'- uGgCGGCacauuCCAAGUCgaaGCCGAAGCCg -3'
miRNA:   3'- gUgGCCG-----GGUUCGGacgUGGCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 36492 0.67 0.530502
Target:  5'- -uCCGGCCUcgcagcgccuccaGAGCC-GCACgGAggUCg -3'
miRNA:   3'- guGGCCGGG-------------UUCGGaCGUGgCUuuGG- -5'
18594 3' -57.3 NC_004682.1 + 10478 0.67 0.521034
Target:  5'- aGCUGGCCCAgcgaGGCUU-CGCgGuGACCg -3'
miRNA:   3'- gUGGCCGGGU----UCGGAcGUGgCuUUGG- -5'
18594 3' -57.3 NC_004682.1 + 41863 0.67 0.521034
Target:  5'- uUAUCGGCCCc-GCCga-GCCgGAAGCCc -3'
miRNA:   3'- -GUGGCCGGGuuCGGacgUGG-CUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 3214 0.67 0.521034
Target:  5'- gAUCGGCCU-GGCUgaagGCAaggucuCCGAGGCCg -3'
miRNA:   3'- gUGGCCGGGuUCGGa---CGU------GGCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 50395 0.67 0.514759
Target:  5'- aUACCGGCCCuggAGGCCgGUucuaugucaaguaugACCGGcccucgaaGGCCg -3'
miRNA:   3'- -GUGGCCGGG---UUCGGaCG---------------UGGCU--------UUGG- -5'
18594 3' -57.3 NC_004682.1 + 2564 0.67 0.510592
Target:  5'- aCACCGgaGCCCAAgGCCcgcaggGCAUucaGggGCCa -3'
miRNA:   3'- -GUGGC--CGGGUU-CGGa-----CGUGg--CuuUGG- -5'
18594 3' -57.3 NC_004682.1 + 23251 0.67 0.510592
Target:  5'- aCAUCGGU---GGCCUGCGCgaGGAGCUg -3'
miRNA:   3'- -GUGGCCGgguUCGGACGUGg-CUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 40767 0.67 0.500239
Target:  5'- uGCCcaugaGGCCCAGGcCCUGUGCCugcuCCu -3'
miRNA:   3'- gUGG-----CCGGGUUC-GGACGUGGcuuuGG- -5'
18594 3' -57.3 NC_004682.1 + 44166 0.67 0.500239
Target:  5'- uGCCGuacgaGUCUggGCCUGCcACCGGGugaauCCa -3'
miRNA:   3'- gUGGC-----CGGGuuCGGACG-UGGCUUu----GG- -5'
18594 3' -57.3 NC_004682.1 + 19491 0.67 0.489979
Target:  5'- cCACCGGgUCGucauGGUCUGCAUCGcAGGCg -3'
miRNA:   3'- -GUGGCCgGGU----UCGGACGUGGC-UUUGg -5'
18594 3' -57.3 NC_004682.1 + 41092 0.67 0.489979
Target:  5'- gACCGGau--GGCCUcaGCCGAGGCCg -3'
miRNA:   3'- gUGGCCggguUCGGAcgUGGCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 19830 0.67 0.486921
Target:  5'- uCGCCGaggcgcugaugcGCCgGGGCgUgaagaucaaggagcGCACCGAGACCg -3'
miRNA:   3'- -GUGGC------------CGGgUUCGgA--------------CGUGGCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 33726 0.68 0.479819
Target:  5'- cCGCCuuGGCCgGGGCCUuCuuCGggGCCu -3'
miRNA:   3'- -GUGG--CCGGgUUCGGAcGugGCuuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.