miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18594 3' -57.3 NC_004682.1 + 138 0.72 0.247429
Target:  5'- cCGCCGGCaCGGGCCgGCACa-GGGCCa -3'
miRNA:   3'- -GUGGCCGgGUUCGGaCGUGgcUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 177 0.69 0.375776
Target:  5'- cUACCuGCCCuaaccccuGCCUGCACCcu-GCCc -3'
miRNA:   3'- -GUGGcCGGGuu------CGGACGUGGcuuUGG- -5'
18594 3' -57.3 NC_004682.1 + 1753 0.67 0.531558
Target:  5'- cCAUCGGgUCGgcAGuucuCCUGCACUGAAGCUa -3'
miRNA:   3'- -GUGGCCgGGU--UC----GGACGUGGCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 1771 0.69 0.421192
Target:  5'- aCGCCcaGCCUucAGCCUGaucuccgucccCACCGAGGCCc -3'
miRNA:   3'- -GUGGc-CGGGu-UCGGAC-----------GUGGCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 2133 0.69 0.402628
Target:  5'- aGCCGGCCCcgaAGGCgaGCA--GGGACCu -3'
miRNA:   3'- gUGGCCGGG---UUCGgaCGUggCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 2249 0.75 0.180412
Target:  5'- cCACCGGCCCGcaagGGCCgaaggGCgACaaggGAGACCa -3'
miRNA:   3'- -GUGGCCGGGU----UCGGa----CG-UGg---CUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 2348 0.73 0.228949
Target:  5'- aUACCGGCCCAaucGGUCc-CACCGGAgacACCg -3'
miRNA:   3'- -GUGGCCGGGU---UCGGacGUGGCUU---UGG- -5'
18594 3' -57.3 NC_004682.1 + 2564 0.67 0.510592
Target:  5'- aCACCGgaGCCCAAgGCCcgcaggGCAUucaGggGCCa -3'
miRNA:   3'- -GUGGC--CGGGUU-CGGa-----CGUGg--CuuUGG- -5'
18594 3' -57.3 NC_004682.1 + 3214 0.67 0.521034
Target:  5'- gAUCGGCCU-GGCUgaagGCAaggucuCCGAGGCCg -3'
miRNA:   3'- gUGGCCGGGuUCGGa---CGU------GGCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 3677 0.68 0.459815
Target:  5'- gCACCgacggaGGCCacaucgGAGCCauCGCCGAAGCCa -3'
miRNA:   3'- -GUGG------CCGGg-----UUCGGacGUGGCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 5253 0.66 0.550688
Target:  5'- gACCGGCCaCGAGuCCgacgacuuccggGCcACCGAGgaguacGCCa -3'
miRNA:   3'- gUGGCCGG-GUUC-GGa-----------CG-UGGCUU------UGG- -5'
18594 3' -57.3 NC_004682.1 + 5446 0.68 0.44998
Target:  5'- gCGCUGGCCgAucugaagugGGCCgGCAUCGGcgcGGCCu -3'
miRNA:   3'- -GUGGCCGGgU---------UCGGaCGUGGCU---UUGG- -5'
18594 3' -57.3 NC_004682.1 + 6117 0.67 0.542158
Target:  5'- uGCUGGCCCGcuacgcGGCCUaCGCCaAGGCg -3'
miRNA:   3'- gUGGCCGGGU------UCGGAcGUGGcUUUGg -5'
18594 3' -57.3 NC_004682.1 + 6707 0.66 0.563558
Target:  5'- gACCGGCUCGaagGGCUggagaagGCACCGuucgagauCCg -3'
miRNA:   3'- gUGGCCGGGU---UCGGa------CGUGGCuuu-----GG- -5'
18594 3' -57.3 NC_004682.1 + 7372 0.67 0.542158
Target:  5'- uCugCGGCCCcguAGCCUucucGCACUucGACg -3'
miRNA:   3'- -GugGCCGGGu--UCGGA----CGUGGcuUUGg -5'
18594 3' -57.3 NC_004682.1 + 7548 0.71 0.287354
Target:  5'- aACCGGUUCAucaucuacuccgaGGCCggcgggcGCAUCGAGGCCg -3'
miRNA:   3'- gUGGCCGGGU-------------UCGGa------CGUGGCUUUGG- -5'
18594 3' -57.3 NC_004682.1 + 7687 0.69 0.393543
Target:  5'- gGCCGGgaCGAccGCCUGgACCGGAGCg -3'
miRNA:   3'- gUGGCCggGUU--CGGACgUGGCUUUGg -5'
18594 3' -57.3 NC_004682.1 + 8277 0.66 0.594959
Target:  5'- gCGCCGGaaaCUCAcucaguuGGCCgcagagGCGCCGccGAGCCa -3'
miRNA:   3'- -GUGGCC---GGGU-------UCGGa-----CGUGGC--UUUGG- -5'
18594 3' -57.3 NC_004682.1 + 8862 0.7 0.358559
Target:  5'- gCGCCGGCCCGAcGCCguagGCGuCaCGGucCCc -3'
miRNA:   3'- -GUGGCCGGGUU-CGGa---CGU-G-GCUuuGG- -5'
18594 3' -57.3 NC_004682.1 + 9817 0.68 0.444135
Target:  5'- aAgCGGCCCAucgugaucgagcgcaAGCacuacgGCACCGAGcugGCCa -3'
miRNA:   3'- gUgGCCGGGU---------------UCGga----CGUGGCUU---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.