miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18595 3' -57.9 NC_004682.1 + 41977 0.66 0.556667
Target:  5'- uGACGCCuacGGCgUCGGGcCGgcGCUCGGa -3'
miRNA:   3'- -UUGCGGc--UUGaGGCCC-GCuuCGAGCU- -5'
18595 3' -57.9 NC_004682.1 + 13808 0.66 0.54599
Target:  5'- gGACGCCGucuaugCCGaGGCGAAGgagCGAg -3'
miRNA:   3'- -UUGCGGCuuga--GGC-CCGCUUCga-GCU- -5'
18595 3' -57.9 NC_004682.1 + 46475 0.66 0.54599
Target:  5'- cGCGCuCGcucacGgUCUGGGCGAAGCcugCGAu -3'
miRNA:   3'- uUGCG-GCu----UgAGGCCCGCUUCGa--GCU- -5'
18595 3' -57.9 NC_004682.1 + 24627 0.66 0.54599
Target:  5'- gAACGCCacGGGCUCCGGuGCcAGGaugUCGAg -3'
miRNA:   3'- -UUGCGG--CUUGAGGCC-CGcUUCg--AGCU- -5'
18595 3' -57.9 NC_004682.1 + 20463 0.66 0.535379
Target:  5'- gAGCGCCaAGCUCCaGcGCGAGGCgagccaGAa -3'
miRNA:   3'- -UUGCGGcUUGAGGcC-CGCUUCGag----CU- -5'
18595 3' -57.9 NC_004682.1 + 41333 0.66 0.514384
Target:  5'- uGACGCCGAACagcagccgCUGGGgGAcgcccaucAGCUCu- -3'
miRNA:   3'- -UUGCGGCUUGa-------GGCCCgCU--------UCGAGcu -5'
18595 3' -57.9 NC_004682.1 + 1834 0.67 0.493732
Target:  5'- -uCGCCcg--UCCGGGCGucuGCUCGGg -3'
miRNA:   3'- uuGCGGcuugAGGCCCGCuu-CGAGCU- -5'
18595 3' -57.9 NC_004682.1 + 44933 0.67 0.493732
Target:  5'- gAACGCCcacGACUUCGGGUGGAcGCcgucgCGAg -3'
miRNA:   3'- -UUGCGGc--UUGAGGCCCGCUU-CGa----GCU- -5'
18595 3' -57.9 NC_004682.1 + 23467 0.67 0.483549
Target:  5'- gGACGCCG---UCCGGGaGAuGUUCGAg -3'
miRNA:   3'- -UUGCGGCuugAGGCCCgCUuCGAGCU- -5'
18595 3' -57.9 NC_004682.1 + 35951 0.67 0.473468
Target:  5'- aGACGCCGAACacaCCaGGCGu-GgUCGAg -3'
miRNA:   3'- -UUGCGGCUUGa--GGcCCGCuuCgAGCU- -5'
18595 3' -57.9 NC_004682.1 + 35188 0.67 0.473468
Target:  5'- -uCGCCGuAUUCgucaaucaggCGGGCGAGcGCUCGGc -3'
miRNA:   3'- uuGCGGCuUGAG----------GCCCGCUU-CGAGCU- -5'
18595 3' -57.9 NC_004682.1 + 17056 0.67 0.46747
Target:  5'- uGAUGCCGAuGCUCacgacgggcaugcaGGGCGuGGCUCa- -3'
miRNA:   3'- -UUGCGGCU-UGAGg-------------CCCGCuUCGAGcu -5'
18595 3' -57.9 NC_004682.1 + 10952 0.67 0.46747
Target:  5'- aGACGCaGAacgcGCUCCgucgucgcccgaacgGGGCGAAGUUCGc -3'
miRNA:   3'- -UUGCGgCU----UGAGG---------------CCCGCUUCGAGCu -5'
18595 3' -57.9 NC_004682.1 + 18166 0.68 0.443882
Target:  5'- cAugGUCaaGAgcGCUCUGGGCGAucugGGCUCGu -3'
miRNA:   3'- -UugCGG--CU--UGAGGCCCGCU----UCGAGCu -5'
18595 3' -57.9 NC_004682.1 + 9588 0.68 0.443882
Target:  5'- --gGUCGGACccgUCCGGGCucgacuacgcGGAGCUUGAg -3'
miRNA:   3'- uugCGGCUUG---AGGCCCG----------CUUCGAGCU- -5'
18595 3' -57.9 NC_004682.1 + 25001 0.68 0.423802
Target:  5'- cGACGCCGAcucggcggcaucuGCUCgcauccaGGGCGAGGCcaaCGGu -3'
miRNA:   3'- -UUGCGGCU-------------UGAGg------CCCGCUUCGa--GCU- -5'
18595 3' -57.9 NC_004682.1 + 13606 0.7 0.328127
Target:  5'- gGACGCCGAGCacggcguUCUGGGCGcucAGUcCGAg -3'
miRNA:   3'- -UUGCGGCUUG-------AGGCCCGCu--UCGaGCU- -5'
18595 3' -57.9 NC_004682.1 + 49319 0.7 0.318709
Target:  5'- cGAUGUCGAACUCCcacucggucuucGGCGAagucugaAGCUCGAa -3'
miRNA:   3'- -UUGCGGCUUGAGGc-----------CCGCU-------UCGAGCU- -5'
18595 3' -57.9 NC_004682.1 + 46893 0.7 0.305716
Target:  5'- cAUGUCGAGC-CCGucuuGGCGAucAGCUCGAa -3'
miRNA:   3'- uUGCGGCUUGaGGC----CCGCU--UCGAGCU- -5'
18595 3' -57.9 NC_004682.1 + 6354 0.72 0.256509
Target:  5'- -cCGCCGAcACggCgCGGGCGguGCUCGAc -3'
miRNA:   3'- uuGCGGCU-UGa-G-GCCCGCuuCGAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.