miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18595 5' -60.2 NC_004682.1 + 36915 0.66 0.457499
Target:  5'- aGUCGACAUCgCUCGGguG-ACGgUCa -3'
miRNA:   3'- gCGGCUGUAGaGGGCCguCcUGCgAG- -5'
18595 5' -60.2 NC_004682.1 + 45718 0.66 0.429041
Target:  5'- uCGCCGACGaagaUCUCCUGcCAGguGugGCUg -3'
miRNA:   3'- -GCGGCUGU----AGAGGGCcGUC--CugCGAg -5'
18595 5' -60.2 NC_004682.1 + 30645 0.66 0.41979
Target:  5'- uCGcCCGACAg--CgCGGcCAGGACGCg- -3'
miRNA:   3'- -GC-GGCUGUagaGgGCC-GUCCUGCGag -5'
18595 5' -60.2 NC_004682.1 + 18925 0.66 0.41979
Target:  5'- uGUCGGgAUCU-CCGGCGacGGcGCGCUCu -3'
miRNA:   3'- gCGGCUgUAGAgGGCCGU--CC-UGCGAG- -5'
18595 5' -60.2 NC_004682.1 + 20083 0.66 0.41979
Target:  5'- -aCCGGCA--UCCCGGCucaGACGCUg -3'
miRNA:   3'- gcGGCUGUagAGGGCCGuc-CUGCGAg -5'
18595 5' -60.2 NC_004682.1 + 30542 0.66 0.417038
Target:  5'- cCGCUccgggcuguccuugGugAUCUCCCGGuCGGGccACGCg- -3'
miRNA:   3'- -GCGG--------------CugUAGAGGGCC-GUCC--UGCGag -5'
18595 5' -60.2 NC_004682.1 + 39686 0.66 0.41066
Target:  5'- -cUCGACGUaCUCCCGGCuGaACGuCUCg -3'
miRNA:   3'- gcGGCUGUA-GAGGGCCGuCcUGC-GAG- -5'
18595 5' -60.2 NC_004682.1 + 16675 0.66 0.41066
Target:  5'- aGCCGACcuGUCUCUgaacgagcuucuCGGCuuccaGGCGCUCu -3'
miRNA:   3'- gCGGCUG--UAGAGG------------GCCGuc---CUGCGAG- -5'
18595 5' -60.2 NC_004682.1 + 16866 0.66 0.41066
Target:  5'- gGCUGGC--CUCCUGGCuGGucuccccuCGCUCa -3'
miRNA:   3'- gCGGCUGuaGAGGGCCGuCCu-------GCGAG- -5'
18595 5' -60.2 NC_004682.1 + 20670 0.66 0.409754
Target:  5'- -cCUGGCGUCggugCCCGaggacaaggcgcaGUGGGGCGCUCa -3'
miRNA:   3'- gcGGCUGUAGa---GGGC-------------CGUCCUGCGAG- -5'
18595 5' -60.2 NC_004682.1 + 17722 0.67 0.401654
Target:  5'- aGCCGAUgAUC-CCCGGCcuGGucgagaacuuCGCUCa -3'
miRNA:   3'- gCGGCUG-UAGaGGGCCGu-CCu---------GCGAG- -5'
18595 5' -60.2 NC_004682.1 + 35152 0.67 0.396312
Target:  5'- aCGCCGuACGUCUCCCagaggucagcgacuaGGCAGu-CGC-Cg -3'
miRNA:   3'- -GCGGC-UGUAGAGGG---------------CCGUCcuGCGaG- -5'
18595 5' -60.2 NC_004682.1 + 3399 0.67 0.392775
Target:  5'- aCGCCGACA---CCgaGGCuccguucgAGGGCGCUCc -3'
miRNA:   3'- -GCGGCUGUagaGGg-CCG--------UCCUGCGAG- -5'
18595 5' -60.2 NC_004682.1 + 32985 0.67 0.384025
Target:  5'- gCGCUGGCGUgCUCC----AGGACGCUCu -3'
miRNA:   3'- -GCGGCUGUA-GAGGgccgUCCUGCGAG- -5'
18595 5' -60.2 NC_004682.1 + 27363 0.67 0.384025
Target:  5'- uCGCCGgaagcucgaACAUCUCCCGGac-GGCGUccUCg -3'
miRNA:   3'- -GCGGC---------UGUAGAGGGCCgucCUGCG--AG- -5'
18595 5' -60.2 NC_004682.1 + 475 0.67 0.375405
Target:  5'- gGCCuccagGGCcgCUUCCGGC-GG-CGCUCa -3'
miRNA:   3'- gCGG-----CUGuaGAGGGCCGuCCuGCGAG- -5'
18595 5' -60.2 NC_004682.1 + 4409 0.67 0.370296
Target:  5'- uGCCGACAagcugaccgacuacaUC-CCCGGC---ACGCUCg -3'
miRNA:   3'- gCGGCUGU---------------AGaGGGCCGuccUGCGAG- -5'
18595 5' -60.2 NC_004682.1 + 24441 0.67 0.358561
Target:  5'- cCGCCGACGUUcgaCCCGGC--GACGUg- -3'
miRNA:   3'- -GCGGCUGUAGa--GGGCCGucCUGCGag -5'
18595 5' -60.2 NC_004682.1 + 26021 0.68 0.35034
Target:  5'- gGCCGGCGUCggacUCCCGccGUAGG-CGgUCg -3'
miRNA:   3'- gCGGCUGUAG----AGGGC--CGUCCuGCgAG- -5'
18595 5' -60.2 NC_004682.1 + 18147 0.68 0.35034
Target:  5'- aGgCGGCAgagCUaCCCGGCAuGGucaagaGCGCUCu -3'
miRNA:   3'- gCgGCUGUa--GA-GGGCCGU-CC------UGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.