miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18596 3' -57.1 NC_004682.1 + 34265 0.66 0.623609
Target:  5'- cCAGGAcuUCCaUCGA--GCCUGGuUGGCc -3'
miRNA:   3'- -GUCCUcuAGG-AGCUggUGGACC-ACCG- -5'
18596 3' -57.1 NC_004682.1 + 36741 0.66 0.623609
Target:  5'- cCAGGAaucGGUCCUUGGCCuucggcuCCaGGgcgagGGCc -3'
miRNA:   3'- -GUCCU---CUAGGAGCUGGu------GGaCCa----CCG- -5'
18596 3' -57.1 NC_004682.1 + 49543 0.66 0.612701
Target:  5'- gAGGGGAcggCUCGACC-CCUccGG-GGCg -3'
miRNA:   3'- gUCCUCUag-GAGCUGGuGGA--CCaCCG- -5'
18596 3' -57.1 NC_004682.1 + 38328 0.66 0.612701
Target:  5'- uGGGcAGGcUCUUGGCCACCgUGuUGGCg -3'
miRNA:   3'- gUCC-UCUaGGAGCUGGUGG-ACcACCG- -5'
18596 3' -57.1 NC_004682.1 + 13180 0.66 0.608342
Target:  5'- uGGGAGAUCCUgGGCUACCgcagaucucGCa -3'
miRNA:   3'- gUCCUCUAGGAgCUGGUGGaccac----CG- -5'
18596 3' -57.1 NC_004682.1 + 38128 0.66 0.590945
Target:  5'- -cGGAGcacguuGUCCUCGuucacucguCCcCCUGGUGGa -3'
miRNA:   3'- guCCUC------UAGGAGCu--------GGuGGACCACCg -5'
18596 3' -57.1 NC_004682.1 + 30416 0.66 0.569324
Target:  5'- gGGGuAGGcCCggucgaagccgUCGACCACCUGcuUGGCa -3'
miRNA:   3'- gUCC-UCUaGG-----------AGCUGGUGGACc-ACCG- -5'
18596 3' -57.1 NC_004682.1 + 12356 0.66 0.569324
Target:  5'- gGGGAGAUCgaCGccaucACCGCUcaggUGuGUGGCa -3'
miRNA:   3'- gUCCUCUAGgaGC-----UGGUGG----AC-CACCG- -5'
18596 3' -57.1 NC_004682.1 + 19186 0.67 0.547905
Target:  5'- aAGGGucUCUUCGAcCCGCCUGugaaaGUGGUa -3'
miRNA:   3'- gUCCUcuAGGAGCU-GGUGGAC-----CACCG- -5'
18596 3' -57.1 NC_004682.1 + 5126 0.67 0.547905
Target:  5'- gCAGGAGAUCUUCGuCgGCgaGGaGGg -3'
miRNA:   3'- -GUCCUCUAGGAGCuGgUGgaCCaCCg -5'
18596 3' -57.1 NC_004682.1 + 14872 0.67 0.526746
Target:  5'- aCGGcGcGAacgCCUCGACCacGCCUGGUGuGUu -3'
miRNA:   3'- -GUC-CuCUa--GGAGCUGG--UGGACCAC-CG- -5'
18596 3' -57.1 NC_004682.1 + 33786 0.67 0.516281
Target:  5'- -cGGGGG-CCUCGgcgggaGCCGCCUGGgccucgucgucGGCa -3'
miRNA:   3'- guCCUCUaGGAGC------UGGUGGACCa----------CCG- -5'
18596 3' -57.1 NC_004682.1 + 5381 0.67 0.5059
Target:  5'- uCGGGAaguGGUgCUUCGACCgcgGCCUGGUGa- -3'
miRNA:   3'- -GUCCU---CUA-GGAGCUGG---UGGACCACcg -5'
18596 3' -57.1 NC_004682.1 + 16825 0.68 0.482377
Target:  5'- aCAGGc-GUCUUCGuggcggcugcacccGCCaucgGCCUGGUGGCu -3'
miRNA:   3'- -GUCCucUAGGAGC--------------UGG----UGGACCACCG- -5'
18596 3' -57.1 NC_004682.1 + 1895 0.69 0.445695
Target:  5'- gAGGGacUCCacaUCGACgGCCaGGUGGCc -3'
miRNA:   3'- gUCCUcuAGG---AGCUGgUGGaCCACCG- -5'
18596 3' -57.1 NC_004682.1 + 9735 0.69 0.445695
Target:  5'- cCAGcAGAUCCUCGGCgACCUGaucGCg -3'
miRNA:   3'- -GUCcUCUAGGAGCUGgUGGACcacCG- -5'
18596 3' -57.1 NC_004682.1 + 29291 0.69 0.426526
Target:  5'- -uGGAGGUCCgcagCGAUgAgcuuccgggucuCCUGGUGGUc -3'
miRNA:   3'- guCCUCUAGGa---GCUGgU------------GGACCACCG- -5'
18596 3' -57.1 NC_004682.1 + 14325 0.7 0.372091
Target:  5'- -cGGcGGUCCUCGACCuccgugcgGCuCUGGaGGCg -3'
miRNA:   3'- guCCuCUAGGAGCUGG--------UG-GACCaCCG- -5'
18596 3' -57.1 NC_004682.1 + 3291 0.7 0.355027
Target:  5'- -cGGGcAUCgUCGGCCACCUGaugGGCa -3'
miRNA:   3'- guCCUcUAGgAGCUGGUGGACca-CCG- -5'
18596 3' -57.1 NC_004682.1 + 38721 0.7 0.346705
Target:  5'- aCAGGGcGUUgUUGACCGCCaGGUaGGCg -3'
miRNA:   3'- -GUCCUcUAGgAGCUGGUGGaCCA-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.