miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18597 3' -59 NC_004682.1 + 35306 0.66 0.479819
Target:  5'- ---cCGGCUCCCGAGagcGUCGUUGUCUGc -3'
miRNA:   3'- cuacGCUGAGGGCUC---CGGUAGCGGAU- -5'
18597 3' -59 NC_004682.1 + 16402 0.66 0.469762
Target:  5'- --gGUGGCacCCaCGGGGaCCAUCGCCa- -3'
miRNA:   3'- cuaCGCUGa-GG-GCUCC-GGUAGCGGau -5'
18597 3' -59 NC_004682.1 + 36324 0.66 0.469762
Target:  5'- --gGCGAgUgCCaGGGCCGUCGUCg- -3'
miRNA:   3'- cuaCGCUgAgGGcUCCGGUAGCGGau -5'
18597 3' -59 NC_004682.1 + 6897 0.66 0.44998
Target:  5'- --aGCGuccGCUCaCCGAGGgCAUCGCa-- -3'
miRNA:   3'- cuaCGC---UGAG-GGCUCCgGUAGCGgau -5'
18597 3' -59 NC_004682.1 + 14342 0.66 0.440262
Target:  5'- cGUGCGGCUCUgGAGGCgcugCGagGCCg- -3'
miRNA:   3'- cUACGCUGAGGgCUCCG----GUagCGGau -5'
18597 3' -59 NC_004682.1 + 30143 0.67 0.421191
Target:  5'- --aGCGAuCUCCUGAGcGCCccacugCGCCUu -3'
miRNA:   3'- cuaCGCU-GAGGGCUC-CGGua----GCGGAu -5'
18597 3' -59 NC_004682.1 + 49951 0.67 0.402628
Target:  5'- cGUGCGAUgCCUGuGGCCGUC-CCg- -3'
miRNA:   3'- cUACGCUGaGGGCuCCGGUAGcGGau -5'
18597 3' -59 NC_004682.1 + 5144 0.67 0.393542
Target:  5'- -cUGCGGgcaUCuCCGAGGCCAagGCCc- -3'
miRNA:   3'- cuACGCUg--AG-GGCUCCGGUagCGGau -5'
18597 3' -59 NC_004682.1 + 22533 0.67 0.384591
Target:  5'- cGAUGCGuggcaguccaUgCCGAGGCCAaCGCCc- -3'
miRNA:   3'- -CUACGCug--------AgGGCUCCGGUaGCGGau -5'
18597 3' -59 NC_004682.1 + 10239 0.67 0.375776
Target:  5'- --cGCGGCacugcauggCUCG-GGCCAUCGCCg- -3'
miRNA:   3'- cuaCGCUGa--------GGGCuCCGGUAGCGGau -5'
18597 3' -59 NC_004682.1 + 17056 0.7 0.28095
Target:  5'- --gGCGGCUCCCgccGAGGCCcccgaagaGUCGCUc- -3'
miRNA:   3'- cuaCGCUGAGGG---CUCCGG--------UAGCGGau -5'
18597 3' -59 NC_004682.1 + 37386 0.7 0.280246
Target:  5'- cGggGCGuaccgggugagguACUCCCGAGGCCgcaggucgugGUUGCCUu -3'
miRNA:   3'- -CuaCGC-------------UGAGGGCUCCGG----------UAGCGGAu -5'
18597 3' -59 NC_004682.1 + 35251 0.77 0.085285
Target:  5'- --aGCGGC-CCCGAGGCCGUgcCGCCg- -3'
miRNA:   3'- cuaCGCUGaGGGCUCCGGUA--GCGGau -5'
18597 3' -59 NC_004682.1 + 20883 1.06 0.000536
Target:  5'- cGAUGCGACUCCCGAGGCCAUCGCCUAc -3'
miRNA:   3'- -CUACGCUGAGGGCUCCGGUAGCGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.