miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18597 5' -57 NC_004682.1 + 3059 0.8 0.076648
Target:  5'- aGGCAGGCcGUCCAacGGAACggGCGCGaGCc -3'
miRNA:   3'- -UCGUCCGaUAGGU--CCUUGa-CGCGC-CG- -5'
18597 5' -57 NC_004682.1 + 21212 0.66 0.543416
Target:  5'- cGCAcccguUCgAGGAuCUGCGCGGCg -3'
miRNA:   3'- uCGUccgauAGgUCCUuGACGCGCCG- -5'
18597 5' -57 NC_004682.1 + 2609 0.67 0.522035
Target:  5'- cAGCAGGCgucccGUCCucGAACgGCaCGGUg -3'
miRNA:   3'- -UCGUCCGa----UAGGucCUUGaCGcGCCG- -5'
18597 5' -57 NC_004682.1 + 10293 0.67 0.511467
Target:  5'- uGCGgaauGGCUGagguUCUuGGAACUGCuGUGGCc -3'
miRNA:   3'- uCGU----CCGAU----AGGuCCUUGACG-CGCCG- -5'
18597 5' -57 NC_004682.1 + 46639 0.67 0.500989
Target:  5'- uGCGGGCgcaggAUCucccaCAGGAACUGgacccucucgaUGUGGCg -3'
miRNA:   3'- uCGUCCGa----UAG-----GUCCUUGAC-----------GCGCCG- -5'
18597 5' -57 NC_004682.1 + 19333 0.67 0.499946
Target:  5'- ---uGGCUGUCgAGGGACUcggaaugGCGCaaGGCg -3'
miRNA:   3'- ucguCCGAUAGgUCCUUGA-------CGCG--CCG- -5'
18597 5' -57 NC_004682.1 + 33272 0.68 0.440305
Target:  5'- cAGCGacGCgaAUUCAGGAACUGCGCGuCa -3'
miRNA:   3'- -UCGUc-CGa-UAGGUCCUUGACGCGCcG- -5'
18597 5' -57 NC_004682.1 + 16645 0.68 0.440305
Target:  5'- cGCAaGU--UCCagcAGGcGCUGCGCGGCa -3'
miRNA:   3'- uCGUcCGauAGG---UCCuUGACGCGCCG- -5'
18597 5' -57 NC_004682.1 + 8955 0.68 0.440305
Target:  5'- cGCAGcGCg--CCAGGAGCUugagggcuucgGCuCGGCg -3'
miRNA:   3'- uCGUC-CGauaGGUCCUUGA-----------CGcGCCG- -5'
18597 5' -57 NC_004682.1 + 36017 0.71 0.316778
Target:  5'- uGCGGGaagagGUCCGGGAcgauCUGCGCccGGUa -3'
miRNA:   3'- uCGUCCga---UAGGUCCUu---GACGCG--CCG- -5'
18597 5' -57 NC_004682.1 + 48613 0.71 0.301416
Target:  5'- cGCGuGGC-GUUCGGGAACUGCGCcuuGCc -3'
miRNA:   3'- uCGU-CCGaUAGGUCCUUGACGCGc--CG- -5'
18597 5' -57 NC_004682.1 + 38811 0.74 0.178457
Target:  5'- cGGCGGGaCUGU-CGGGAagGCUGCGcCGGUa -3'
miRNA:   3'- -UCGUCC-GAUAgGUCCU--UGACGC-GCCG- -5'
18597 5' -57 NC_004682.1 + 29933 0.68 0.440305
Target:  5'- cGCAGGCcgaagaugAUCCacagcuugGGGAACUGCaGCuccgGGCg -3'
miRNA:   3'- uCGUCCGa-------UAGG--------UCCUUGACG-CG----CCG- -5'
18597 5' -57 NC_004682.1 + 37852 0.68 0.450135
Target:  5'- uGguGGCcagGUCCGGGA--UGCGCcGCu -3'
miRNA:   3'- uCguCCGa--UAGGUCCUugACGCGcCG- -5'
18597 5' -57 NC_004682.1 + 6763 0.67 0.490606
Target:  5'- aGGCAGGCUuggaguUCCAccaccgcCUGCGgCGGCu -3'
miRNA:   3'- -UCGUCCGAu-----AGGUccuu---GACGC-GCCG- -5'
18597 5' -57 NC_004682.1 + 29852 0.67 0.490606
Target:  5'- gAGCGGGUUGUCCGGGA---GCGUc-- -3'
miRNA:   3'- -UCGUCCGAUAGGUCCUugaCGCGccg -5'
18597 5' -57 NC_004682.1 + 7763 0.67 0.511467
Target:  5'- cAGCGucGGCgugacAagCAGGAGCUGCGUaaggaGGCa -3'
miRNA:   3'- -UCGU--CCGa----UagGUCCUUGACGCG-----CCG- -5'
18597 5' -57 NC_004682.1 + 24155 0.67 0.532687
Target:  5'- gGGCaAGGCgAUCCuGGAggACaUG-GCGGCg -3'
miRNA:   3'- -UCG-UCCGaUAGGuCCU--UG-ACgCGCCG- -5'
18597 5' -57 NC_004682.1 + 13092 0.66 0.575991
Target:  5'- cGCGGGCUAcgCAGG--CUGCGuCGaGCg -3'
miRNA:   3'- uCGUCCGAUagGUCCuuGACGC-GC-CG- -5'
18597 5' -57 NC_004682.1 + 20917 1 0.002433
Target:  5'- cAGCAGGCUAUCCAGGAACUGCGCcggaucGGCg -3'
miRNA:   3'- -UCGUCCGAUAGGUCCUUGACGCG------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.