Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18597 | 5' | -57 | NC_004682.1 | + | 5307 | 0.69 | 0.393069 |
|
Target: 5'- cGCAGGCggGUCCAacuuGuGAACaccgcaGUGCGGCg -3' miRNA: 3'- uCGUCCGa-UAGGU----C-CUUGa-----CGCGCCG- -5' |
|||||||
| 18597 | 5' | -57 | NC_004682.1 | + | 45761 | 0.7 | 0.366353 |
|
Target: 5'- uGCGGGUg---CGGGAGCagccgGUGCGGCg -3' miRNA: 3'- uCGUCCGauagGUCCUUGa----CGCGCCG- -5' |
|||||||
| 18597 | 5' | -57 | NC_004682.1 | + | 41388 | 0.7 | 0.35773 |
|
Target: 5'- cAGCAucaGC-GUCCGGGcAGCUGCGuCGGUg -3' miRNA: 3'- -UCGUc--CGaUAGGUCC-UUGACGC-GCCG- -5' |
|||||||
| 18597 | 5' | -57 | NC_004682.1 | + | 36017 | 0.71 | 0.316778 |
|
Target: 5'- uGCGGGaagagGUCCGGGAcgauCUGCGCccGGUa -3' miRNA: 3'- uCGUCCga---UAGGUCCUu---GACGCG--CCG- -5' |
|||||||
| 18597 | 5' | -57 | NC_004682.1 | + | 48613 | 0.71 | 0.301416 |
|
Target: 5'- cGCGuGGC-GUUCGGGAACUGCGCcuuGCc -3' miRNA: 3'- uCGU-CCGaUAGGUCCUUGACGCGc--CG- -5' |
|||||||
| 18597 | 5' | -57 | NC_004682.1 | + | 45718 | 0.74 | 0.193563 |
|
Target: 5'- cAGCAcGCg--CCAGGAucgGCGCGGCg -3' miRNA: 3'- -UCGUcCGauaGGUCCUugaCGCGCCG- -5' |
|||||||
| 18597 | 5' | -57 | NC_004682.1 | + | 38811 | 0.74 | 0.178457 |
|
Target: 5'- cGGCGGGaCUGU-CGGGAagGCUGCGcCGGUa -3' miRNA: 3'- -UCGUCC-GAUAgGUCCU--UGACGC-GCCG- -5' |
|||||||
| 18597 | 5' | -57 | NC_004682.1 | + | 3059 | 0.8 | 0.076648 |
|
Target: 5'- aGGCAGGCcGUCCAacGGAACggGCGCGaGCc -3' miRNA: 3'- -UCGUCCGaUAGGU--CCUUGa-CGCGC-CG- -5' |
|||||||
| 18597 | 5' | -57 | NC_004682.1 | + | 12399 | 0.81 | 0.062564 |
|
Target: 5'- cGGUGGGCgugCCAGGAGCacagGCGUGGCa -3' miRNA: 3'- -UCGUCCGauaGGUCCUUGa---CGCGCCG- -5' |
|||||||
| 18597 | 5' | -57 | NC_004682.1 | + | 20917 | 1 | 0.002433 |
|
Target: 5'- cAGCAGGCUAUCCAGGAACUGCGCcggaucGGCg -3' miRNA: 3'- -UCGUCCGAUAGGUCCUUGACGCG------CCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home