miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18599 5' -54.7 NC_004682.1 + 38034 0.66 0.71678
Target:  5'- cGCUCGC-UGGCggCGUcgGgggGAUCGCu -3'
miRNA:   3'- -CGAGCGuGCCGa-GCGuaCag-CUAGUG- -5'
18599 5' -54.7 NC_004682.1 + 35204 0.66 0.71678
Target:  5'- uCUCGCucaGGauCUCGCAcacGUCGAUCAa -3'
miRNA:   3'- cGAGCGug-CC--GAGCGUa--CAGCUAGUg -5'
18599 5' -54.7 NC_004682.1 + 43102 0.66 0.714619
Target:  5'- uGCgCGUACGGcCUUGCGgugguccuucugGUCGGUCGg -3'
miRNA:   3'- -CGaGCGUGCC-GAGCGUa-----------CAGCUAGUg -5'
18599 5' -54.7 NC_004682.1 + 17832 0.67 0.650869
Target:  5'- gGCUCGguCaucaaGCUCGCGccgaUGUUGAUCAg -3'
miRNA:   3'- -CGAGCguGc----CGAGCGU----ACAGCUAGUg -5'
18599 5' -54.7 NC_004682.1 + 45578 0.67 0.650869
Target:  5'- aGCcccaGCGCGGCgaGCAUGgcggCGAUCAg -3'
miRNA:   3'- -CGag--CGUGCCGagCGUACa---GCUAGUg -5'
18599 5' -54.7 NC_004682.1 + 39550 0.68 0.62864
Target:  5'- --aCGCACGGCUUGCgcuuGUGcgcUCGAUCc- -3'
miRNA:   3'- cgaGCGUGCCGAGCG----UAC---AGCUAGug -5'
18599 5' -54.7 NC_004682.1 + 42381 0.68 0.595344
Target:  5'- -aUCGCuuugucUGGCcgCGCAUGUCGAagGCa -3'
miRNA:   3'- cgAGCGu-----GCCGa-GCGUACAGCUagUG- -5'
18599 5' -54.7 NC_004682.1 + 10527 0.69 0.562332
Target:  5'- cGgUCGgACGGaCUCGC-UGccguUCGGUCACa -3'
miRNA:   3'- -CgAGCgUGCC-GAGCGuAC----AGCUAGUG- -5'
18599 5' -54.7 NC_004682.1 + 15607 0.69 0.529835
Target:  5'- gGC-CGCugccguUGGCUCGgAUGUUGAUCGa -3'
miRNA:   3'- -CGaGCGu-----GCCGAGCgUACAGCUAGUg -5'
18599 5' -54.7 NC_004682.1 + 9866 0.71 0.427547
Target:  5'- gGC-CGC-UGGCUCGCAacgUGUCGGagCACa -3'
miRNA:   3'- -CGaGCGuGCCGAGCGU---ACAGCUa-GUG- -5'
18599 5' -54.7 NC_004682.1 + 27598 0.71 0.417961
Target:  5'- aGCUUGCugGuGCUCaGCucccugGUGUCGGUgGCg -3'
miRNA:   3'- -CGAGCGugC-CGAG-CG------UACAGCUAgUG- -5'
18599 5' -54.7 NC_004682.1 + 41628 0.72 0.372059
Target:  5'- gGCgCGgAUGGCUCGCAucaccUGUCGGgugCGCg -3'
miRNA:   3'- -CGaGCgUGCCGAGCGU-----ACAGCUa--GUG- -5'
18599 5' -54.7 NC_004682.1 + 20058 1.1 0.000815
Target:  5'- gGCUCGCACGGCUCGCAUGUCGAUCACc -3'
miRNA:   3'- -CGAGCGUGCCGAGCGUACAGCUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.