miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18600 3' -55.2 NC_004682.1 + 12167 0.68 0.602364
Target:  5'- aAGugGACCGGcacccuGCUGGACAacgucaccgagccgaUCcucaacACGGCg -3'
miRNA:   3'- -UCugCUGGCC------CGACCUGU---------------AGa-----UGUCG- -5'
18600 3' -55.2 NC_004682.1 + 36719 0.68 0.597955
Target:  5'- cGACGGCCuGGaCgcgGGGCAUCUG-GGCc -3'
miRNA:   3'- uCUGCUGGcCC-Ga--CCUGUAGAUgUCG- -5'
18600 3' -55.2 NC_004682.1 + 4551 0.68 0.597955
Target:  5'- aGGA-GACC-GGCUGGugGUguggccCUGCGGCc -3'
miRNA:   3'- -UCUgCUGGcCCGACCugUA------GAUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 22126 0.68 0.597955
Target:  5'- aGGACGGCCcgaaGGGCUGGGac-CUGgagauCGGCu -3'
miRNA:   3'- -UCUGCUGG----CCCGACCUguaGAU-----GUCG- -5'
18600 3' -55.2 NC_004682.1 + 25338 0.68 0.597955
Target:  5'- cGACG-CUGGaCUGGGaccugAUCUACAGCc -3'
miRNA:   3'- uCUGCuGGCCcGACCUg----UAGAUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 21486 0.68 0.565076
Target:  5'- aGGACGGCacaGGccGCUGGAagGUCUAC-GCg -3'
miRNA:   3'- -UCUGCUGg--CC--CGACCUg-UAGAUGuCG- -5'
18600 3' -55.2 NC_004682.1 + 35485 0.69 0.500989
Target:  5'- gGGugGuCCGGGUcgcagacgaugUGGACGU--ACAGCu -3'
miRNA:   3'- -UCugCuGGCCCG-----------ACCUGUAgaUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 42777 0.7 0.480324
Target:  5'- cGGGCaGACCGGGCuucggucccaugUGGACGUUc-CAGUa -3'
miRNA:   3'- -UCUG-CUGGCCCG------------ACCUGUAGauGUCG- -5'
18600 3' -55.2 NC_004682.1 + 25357 0.7 0.460084
Target:  5'- gGGugGAuCUGGGuCUGGAucuucguagcCAUCUcgaACAGCa -3'
miRNA:   3'- -UCugCU-GGCCC-GACCU----------GUAGA---UGUCG- -5'
18600 3' -55.2 NC_004682.1 + 24527 0.7 0.4541
Target:  5'- cGGACuACCgGGGCUGGggcuucaucagcucuACGUCgaacgGCGGCa -3'
miRNA:   3'- -UCUGcUGG-CCCGACC---------------UGUAGa----UGUCG- -5'
18600 3' -55.2 NC_004682.1 + 33119 0.71 0.411569
Target:  5'- cGACcaGGCCGgggaucaucGGCUGGAUcugCUGCAGCg -3'
miRNA:   3'- uCUG--CUGGC---------CCGACCUGua-GAUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 24340 0.72 0.34925
Target:  5'- cGGGCagaGCUGGGCUGcGugGUCgACGGCg -3'
miRNA:   3'- -UCUGc--UGGCCCGAC-CugUAGaUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 7362 0.72 0.34925
Target:  5'- uGACGACUuccaGCUuGGCGUCUACAGCg -3'
miRNA:   3'- uCUGCUGGcc--CGAcCUGUAGAUGUCG- -5'
18600 3' -55.2 NC_004682.1 + 34853 0.73 0.332724
Target:  5'- cAGACGACCucguuGGGCUccccGACGUUggACAGCg -3'
miRNA:   3'- -UCUGCUGG-----CCCGAc---CUGUAGa-UGUCG- -5'
18600 3' -55.2 NC_004682.1 + 19130 1.13 0.000525
Target:  5'- gAGACGACCGGGCUGGACAUCUACAGCg -3'
miRNA:   3'- -UCUGCUGGCCCGACCUGUAGAUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.