miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18600 5' -58.5 NC_004682.1 + 41976 0.66 0.493547
Target:  5'- gUGaCGCCUaCGgcgUCGGgcCGGCGCUCg -3'
miRNA:   3'- aACgGCGGA-GCa--GGUCaaGCCGUGAG- -5'
18600 5' -58.5 NC_004682.1 + 484 0.66 0.493547
Target:  5'- -gGCCGCU---UCCGG--CGGCGCUCa -3'
miRNA:   3'- aaCGGCGGagcAGGUCaaGCCGUGAG- -5'
18600 5' -58.5 NC_004682.1 + 40711 0.66 0.463083
Target:  5'- cUUGCCGUgCUCGUCCcacUCGGC-UUCg -3'
miRNA:   3'- -AACGGCG-GAGCAGGucaAGCCGuGAG- -5'
18600 5' -58.5 NC_004682.1 + 13508 0.66 0.463083
Target:  5'- gUGCaagGCCa-GUCCGGUacgUCGGCACg- -3'
miRNA:   3'- aACGg--CGGagCAGGUCA---AGCCGUGag -5'
18600 5' -58.5 NC_004682.1 + 14876 0.67 0.44333
Target:  5'- -cGCgaaCGCCUCGaCCAcgccugguguGUUCGGCGuCUCg -3'
miRNA:   3'- aaCG---GCGGAGCaGGU----------CAAGCCGU-GAG- -5'
18600 5' -58.5 NC_004682.1 + 36880 0.67 0.44333
Target:  5'- -cGCCGCC-CG-CCuGaUCGGCuuGCUCa -3'
miRNA:   3'- aaCGGCGGaGCaGGuCaAGCCG--UGAG- -5'
18600 5' -58.5 NC_004682.1 + 33724 0.67 0.442355
Target:  5'- -aGCCGCCUUGgCCGGggccuucUUCGGgGcCUCa -3'
miRNA:   3'- aaCGGCGGAGCaGGUC-------AAGCCgU-GAG- -5'
18600 5' -58.5 NC_004682.1 + 43142 0.67 0.39612
Target:  5'- -aGCCGCCaCGcUCCGGUccaGGCGgUCg -3'
miRNA:   3'- aaCGGCGGaGC-AGGUCAag-CCGUgAG- -5'
18600 5' -58.5 NC_004682.1 + 30373 0.69 0.335725
Target:  5'- -gGCuCGCCUCGcgCUGGagcUUGGCGCUCa -3'
miRNA:   3'- aaCG-GCGGAGCa-GGUCa--AGCCGUGAG- -5'
18600 5' -58.5 NC_004682.1 + 31990 0.69 0.31975
Target:  5'- -aGCCGUCUUGUUCAGaaggUCGucGUACUCa -3'
miRNA:   3'- aaCGGCGGAGCAGGUCa---AGC--CGUGAG- -5'
18600 5' -58.5 NC_004682.1 + 8650 0.69 0.304353
Target:  5'- -cGCCGCCgucugcgCgGUCCucgcGUUCGGCGCg- -3'
miRNA:   3'- aaCGGCGGa------G-CAGGu---CAAGCCGUGag -5'
18600 5' -58.5 NC_004682.1 + 47799 0.69 0.304353
Target:  5'- -aGCCGCCUCGUCCugaucgaacGGUgacggaaccuguUCgGGCACa- -3'
miRNA:   3'- aaCGGCGGAGCAGG---------UCA------------AG-CCGUGag -5'
18600 5' -58.5 NC_004682.1 + 47184 0.78 0.073705
Target:  5'- gUGCCGCCUCGUCgg---CGGUACUCa -3'
miRNA:   3'- aACGGCGGAGCAGgucaaGCCGUGAG- -5'
18600 5' -58.5 NC_004682.1 + 19167 1.06 0.000601
Target:  5'- gUUGCCGCCUCGUCCAGUUCGGCACUCc -3'
miRNA:   3'- -AACGGCGGAGCAGGUCAAGCCGUGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.