miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18603 3' -50.5 NC_004682.1 + 10602 0.66 0.922852
Target:  5'- aCUGGGCAuUGACCAggccguguucgucgGC-CACuCGAUGGg -3'
miRNA:   3'- -GGCUUGU-ACUGGU--------------UGaGUG-GCUACCa -5'
18603 3' -50.5 NC_004682.1 + 34822 0.66 0.918513
Target:  5'- uUCGAGCGUGAU---CUCACCGcagGGg -3'
miRNA:   3'- -GGCUUGUACUGguuGAGUGGCua-CCa -5'
18603 3' -50.5 NC_004682.1 + 46574 0.66 0.918513
Target:  5'- cCUGGGC--GAUCAGCUUGgCGAUGGUu -3'
miRNA:   3'- -GGCUUGuaCUGGUUGAGUgGCUACCA- -5'
18603 3' -50.5 NC_004682.1 + 23106 0.66 0.918513
Target:  5'- cCCGAACGcUGGCgagaCAGCaUCACCGucaGGUg -3'
miRNA:   3'- -GGCUUGU-ACUG----GUUG-AGUGGCua-CCA- -5'
18603 3' -50.5 NC_004682.1 + 44889 0.66 0.912066
Target:  5'- gCCGAACuUGGCCAGCcagCGCCGc---- -3'
miRNA:   3'- -GGCUUGuACUGGUUGa--GUGGCuacca -5'
18603 3' -50.5 NC_004682.1 + 35732 0.67 0.898301
Target:  5'- gCCGGAUcaGAUCGgcgcGCUCACCGGggaGGUg -3'
miRNA:   3'- -GGCUUGuaCUGGU----UGAGUGGCUa--CCA- -5'
18603 3' -50.5 NC_004682.1 + 6553 0.67 0.89099
Target:  5'- -aGAACGUGGCCGACcucuugcagcggUCACgGGuUGGg -3'
miRNA:   3'- ggCUUGUACUGGUUG------------AGUGgCU-ACCa -5'
18603 3' -50.5 NC_004682.1 + 48608 0.67 0.89099
Target:  5'- gCCGGugG-GACCuGCUgGgCCGGUGGg -3'
miRNA:   3'- -GGCUugUaCUGGuUGAgU-GGCUACCa -5'
18603 3' -50.5 NC_004682.1 + 5012 0.67 0.89099
Target:  5'- gCGAGCAauUGGCCGACgcggUCGCUGA-GGc -3'
miRNA:   3'- gGCUUGU--ACUGGUUG----AGUGGCUaCCa -5'
18603 3' -50.5 NC_004682.1 + 48947 0.67 0.875537
Target:  5'- uCCGAGCAugaUGAUCAugUCuuCGcgGGa -3'
miRNA:   3'- -GGCUUGU---ACUGGUugAGugGCuaCCa -5'
18603 3' -50.5 NC_004682.1 + 23587 0.68 0.867406
Target:  5'- cCCGGACGUGcuggaggaCGACuUCGCCGAUGu- -3'
miRNA:   3'- -GGCUUGUACug------GUUG-AGUGGCUACca -5'
18603 3' -50.5 NC_004682.1 + 13729 0.68 0.867406
Target:  5'- gCGGcgACGUGACCAagACcgUCACCGGcaUGGa -3'
miRNA:   3'- gGCU--UGUACUGGU--UG--AGUGGCU--ACCa -5'
18603 3' -50.5 NC_004682.1 + 49085 0.68 0.859015
Target:  5'- gCUGGGCGUGACCcgacgauCUUGCCGGUcGGc -3'
miRNA:   3'- -GGCUUGUACUGGuu-----GAGUGGCUA-CCa -5'
18603 3' -50.5 NC_004682.1 + 36826 0.68 0.850372
Target:  5'- gCCGAACAUGccgccgggGCCGAacaCACCGGacggcUGGUg -3'
miRNA:   3'- -GGCUUGUAC--------UGGUUga-GUGGCU-----ACCA- -5'
18603 3' -50.5 NC_004682.1 + 41260 0.68 0.850372
Target:  5'- cCCGGACGgguccGACCGGCcaccacgguucuUCACCG-UGGa -3'
miRNA:   3'- -GGCUUGUa----CUGGUUG------------AGUGGCuACCa -5'
18603 3' -50.5 NC_004682.1 + 49715 0.68 0.841486
Target:  5'- aCGGugGUGAgUAGCUgACCGuUGGg -3'
miRNA:   3'- gGCUugUACUgGUUGAgUGGCuACCa -5'
18603 3' -50.5 NC_004682.1 + 17696 0.68 0.832366
Target:  5'- aCUGGGCcgGcACCGGCUaCACCGAcucgGGg -3'
miRNA:   3'- -GGCUUGuaC-UGGUUGA-GUGGCUa---CCa -5'
18603 3' -50.5 NC_004682.1 + 12996 0.69 0.823022
Target:  5'- cCCGGACcUGGCCAccaaGgUCACCGAcccGGa -3'
miRNA:   3'- -GGCUUGuACUGGU----UgAGUGGCUa--CCa -5'
18603 3' -50.5 NC_004682.1 + 5154 0.69 0.823022
Target:  5'- gCCGAACA-GGCCcacguGCUgGCCGAgacuUGGa -3'
miRNA:   3'- -GGCUUGUaCUGGu----UGAgUGGCU----ACCa -5'
18603 3' -50.5 NC_004682.1 + 9299 0.69 0.783627
Target:  5'- aUCGAcaACGUGACCAACguccgCACCGGc--- -3'
miRNA:   3'- -GGCU--UGUACUGGUUGa----GUGGCUacca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.